CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_PELTS (ATP-dependent Clp protease proteolytic subunit OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=clpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.320e-15
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG     +   LI+A+ L+L+ ED EK I  YINS G        G  T   AIYD M YV+ P+ T+C+G A   A+LLL AGAKG
Sbjct:   26 KDRIIFLGGPIDDNTANLIIAQMLFLEAEDPEKDIQFYINSPG--------GVVTAGMAIYDTMQYVRSPVATICIGQAASMASLLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_DESAH (ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.320e-15
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG +    V  LI+A+ L+L+ ED EK I  YINS G        G  T   A+YD M Y+KP + T+C+G A     LLL AGAKG
Sbjct:   26 KDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPG--------GVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.643e-15
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CVG A   A +LL AGAKG
Sbjct:   35 KDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKG 119          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.643e-15
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CVG A   A +LL AGAKG
Sbjct:   35 KDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKG 119          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.643e-15
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CVG A   A +LL AGAKG
Sbjct:   35 KDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKG 119          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_HAEPS (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=clpP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.643e-15
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       + +LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC+G A      LL AGAKG
Sbjct:   26 KERIIFLNGGVEDEMAKLIIAQMLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVSTLCMGQACSMGAFLLSAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.643e-15
Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  121 GSNLHQTWHRYWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            G   +  W R   K+R +++G      V  L++A+ L+L+ ED EK I+LYINS G        G  T   AIYD M Y+KP + T+C+G A      LL AGAKG
Sbjct:   15 GERSYDIWSRL-LKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPG--------GVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKG 111          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_PELPD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter propionicus (strain DSM 2379) GN=clpP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.369e-15
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++LG      V  LI+A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CVG A     +LL AG KG
Sbjct:   25 KERIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLYINSPG--------GVVTSGMAIYDTMRYIKAPVSTICVGQAASMGAVLLAAGEKG 109          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CALS8 (ATP-dependent Clp protease proteolytic subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.369e-15
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV L       +  LI+A+ L+L+ ED +K IYLYINS G        G  T  FAIYD + Y+KP + T+CVG A      LL AGAKG
Sbjct:   27 KDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPG--------GSVTAGFAIYDTIQYIKPDVSTICVGMAASMGAFLLAAGAKG 111          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_PELCD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.625e-15
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG +    V  LI+A+ L+L+ ED EK I+LYINS G        G  T   AIYD M YV+ P+ TLCVG A     +LL AG +G
Sbjct:   26 KDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPG--------GVVTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEG 110          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_PELTS4.320e-1546.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAH4.320e-1545.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THESQ5.643e-1546.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP15.643e-1546.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA5.643e-1546.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEPS5.643e-1545.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARHZ5.643e-1540.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELPD7.369e-1545.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CALS87.369e-1546.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELCD9.625e-1546.24ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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