CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_PROM9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.281e-13
Identity = 47/126 (37.30%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS  ++ W   + +    RI++LG      +   ++A+ LYL  +D  KPIYLYINS G        G  T   AIYD + YVK  + T+CVG A      LL AG KG
Sbjct:    3 IGTPSVPY------RLPGSQ-YERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNSKPIYLYINSPG--------GSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLAAGTKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CYAP8 (ATP-dependent Clp protease proteolytic subunit OS=Cyanothece sp. (strain PCC 8801) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.898e-13
Identity = 48/126 (38.10%), Postives = 61/126 (48.41%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            LG PS P+       L GS  ++ W   + +    RI++LG      +   I+A  LYL  ED  KPIYLYINS G        G  T   AIYD M Y+K  + T+CVG A      LL +G  G
Sbjct:    3 LGVPSVPY------RLPGSQ-YERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPGKPIYLYINSPG--------GSVTAGMAIYDTMQYIKSDVITICVGLAASMGAFLLASGTPG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOTE (ATP-dependent Clp protease proteolytic subunit OS=Clostridium tetani GN=clpP PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.898e-13
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L          LI+A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+KP + T+C+G A      LL AGAKG
Sbjct:   26 KDRIIMLSDQVNDVTASLIVAQLLFLEAEDPDKDIFLYINSPG--------GSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_BARQU (ATP-dependent Clp protease proteolytic subunit OS=Bartonella quintana GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.898e-13
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+++      S+  L+ A+ L+L+ E+ +K I LYINS G        G  T   AIYD M +++PP+ TLC+G A    +LLL AGAKG
Sbjct:   34 KERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEISLYINSPG--------GVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKG 118          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP3_ANASP (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.898e-13
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  157 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            Y+ RI++LG      +   I+A  LYL  ED  K IYLYINS G        G  T   AIYD M ++K  + T+CVG A    + LL AG KG
Sbjct:   28 YRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPG--------GMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.898e-13
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            ++RI++LG      +  LI+A+ LYL+ ED EK IYLYINS G        G      AIYD M +++P + T+C+G A      LL  G KG
Sbjct:   24 RDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG--------GSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKG 108          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_ANAVT (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.898e-13
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  157 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            Y+ RI++LG      +   I+A  LYL  ED  K IYLYINS G        G  T   AIYD M ++K  + T+CVG A    + LL AG KG
Sbjct:   28 YRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPG--------GMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_NEOSM (ATP-dependent Clp protease proteolytic subunit OS=Neorickettsia sennetsu (strain Miyayama) GN=clpP PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 9.009e-13
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+V+L       +  LI+A+ L+L+ E+ +K I++YINS G        G  T   +IYD M Y+KP + T+CVG A   A+L+L +GA+G
Sbjct:   26 KERVVFLTGPIEDGMASLIVAQLLFLEAENPDKDIFMYINSPG--------GVVTAGLSIYDTMQYIKPSVSTVCVGQAASAASLILASGAEG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_GEOTN (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.009e-13
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG      V   I+++ L+L  ED EK I LYINS G        G  T   AIYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   26 KDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPG--------GSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_BUCAI (ATP-dependent Clp protease proteolytic subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=clpP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.009e-13
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  103 LLVELH--GSNLHQTWHRYWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            ++VE H  G   +  + R   K RI+++  +   ++   I+A+ L+L+ E+ EK I+LYINS G        G  T   +IYD M +VKP I T+C+G A   A LLL +GAKG
Sbjct:   20 MVVEQHSRGERSYDIYSRL-LKERIIFITGAIEDNMANNIVAQILFLEAENPEKDIFLYINSPG--------GIITSGMSIYDTMQFVKPEISTICLGQACSMAALLLTSGAKG 124          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP2_PROM95.281e-1337.30ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_CYAP86.898e-1338.10ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOTE6.898e-1343.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BARQU6.898e-1341.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_ANASP6.898e-1342.55Probable ATP-dependent Clp protease proteolytic su... [more]
CLPP2_SYNJB6.898e-1340.86ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_ANAVT6.898e-1342.55ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_NEOSM9.009e-1339.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOTN9.009e-1343.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BUCAI9.009e-1338.60ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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