CN185831 | Citrus Genome Database

Overview


Name	CN185831
Unique Name	CN185831
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	438

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNP6 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.537e-12
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            + RI++LG      V   I+A+ L+L+ ED EK IYLYINS G        G   +   I+D M +++P + T+CVG A      LL AGAKG
Sbjct:   24 RERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPG--------GSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKG 108

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNE7 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.537e-12
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            + RI++LG      V   I+A+ L+L+ ED EK IYLYINS G        G   +   I+D M +++P + T+CVG A      LL AGAKG
Sbjct:   24 RERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPG--------GSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKG 108

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_AGRT5 (ATP-dependent Clp protease proteolytic subunit 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.537e-12
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            + RI++L      +V+ L+ A+ L+L+ E+ +KPI+LYINS G        G  T  FA+YD M Y++ P+ TLC+G A    + LL AG  G
Sbjct:   30 RERIIFLNGEVDDTVSALVCAQLLFLEAENPKKPIHLYINSPG--------GMVTSGFAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPG 114

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHISS (ATP-dependent Clp protease proteolytic subunit OS=Shigella sonnei (strain Ss046) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHIFL (ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHIF8 (ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri serotype 5b (strain 8401) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHIDS (ATP-dependent Clp protease proteolytic subunit OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHIBS (ATP-dependent Clp protease proteolytic subunit OS=Shigella boydii serotype 4 (strain Sb227) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SALTY (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123

[Close]

BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SALTI (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1

Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123

The following BLAST results are available for this feature:

BLAST of CN185831 vs. ExPASy Swiss-Prot

BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408


Match Name	E-value	Identity	Description
CLPP1_SYNP6	1.537e-12	40.86	ATP-dependent Clp protease proteolytic subunit 1 O...	[more]
CLPP1_SYNE7	1.537e-12	40.86	ATP-dependent Clp protease proteolytic subunit 1 O...	[more]
CLPP1_AGRT5	1.537e-12	39.78	ATP-dependent Clp protease proteolytic subunit 1 O...	[more]
CLPP_SHISS	2.007e-12	40.86	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SHIFL	2.007e-12	40.86	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SHIF8	2.007e-12	40.86	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SHIDS	2.007e-12	40.86	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SHIBS	2.007e-12	40.86	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALTY	2.007e-12	40.86	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALTI	2.007e-12	40.86	ATP-dependent Clp protease proteolytic subunit OS=...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA