CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SALSV (ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SALPK (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A (strain AKU_12601) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SALPA (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SALNS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella newport (strain SL254) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SALHS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella heidelberg (strain SL476) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SALEP (ATP-dependent Clp protease proteolytic subunit OS=Salmonella enteritidis PT4 (strain P125109) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SALCH (ATP-dependent Clp protease proteolytic subunit OS=Salmonella choleraesuis GN=clpP PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   39 KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SACD2 (ATP-dependent Clp protease proteolytic subunit OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 1
Query:   55 SASPNLGAPSSPWSFLLLVELHGSNLHQTWHRYWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            SAS NL   ++    ++     G   +  + R   K R+++L       +  L++A+ L+L+ E+ +K I+LYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:    7 SASSNLNVENTLVPMVVEQTARGERSYDIYSRL-LKERVIFLVGQVEDHMANLVVAQMLFLEAENPDKDIHLYINSPG--------GSVTAGLSIYDTMQFIKPDVSTMCIGQACSMGAFLLTAGAKG 125          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_PASMU (ATP-dependent Clp protease proteolytic subunit OS=Pasteurella multocida GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 40/93 (43.01%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++LG      +  LI+A+ L+L+ ED EK I +YINS G        G  T   AIYD M +VKP I TLCVG A      LL  G  G
Sbjct:   26 KERVIFLGGEVEDRMANLIVAQLLFLESEDPEKDINIYINSPG--------GSVTAGMAIYDTMQFVKPDIRTLCVGQACSMGAFLLAGGTAG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_EUBR3 (ATP-dependent Clp protease proteolytic subunit OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG     +   L++A+ L+L+ ED  K I+LYINS G        G  T   AIYD M Y+K  + T+C+G A      LL  GAKG
Sbjct:   26 KDRIIFLGEEVNETTASLVVAQLLFLESEDPNKDIHLYINSPG--------GMVTAGLAIYDTMQYIKCDVSTICIGLAASMGAFLLAGGAKG 110          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_SALSV2.007e-1240.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALPK2.007e-1240.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALPA2.007e-1240.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALNS2.007e-1240.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALHS2.007e-1240.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALEP2.007e-1240.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALCH2.007e-1240.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SACD22.007e-1232.81ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PASMU2.007e-1243.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EUBR32.007e-1240.86ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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