CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6946 contig Csv1_Contig6946:175..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_DESRM (ATP-dependent Clp protease proteolytic subunit OS=Desulfotomaculum reducens (strain MI-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.625e-15
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+++G      +  L++A+FL+L+ ED EK I+LYINS G        G  T   AIYD M Y+KP + T+C+G A    + LL AGA G
Sbjct:   27 KDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPG--------GVVTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAPG 111          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNE7 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.625e-15
Identity = 49/126 (38.89%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS+  + W   + +    RI++LG      +   I+A+ LYL  ED  KPIYLYINS G        G  T   AIYD M Y+K P+ T+C+G A      LL AG+KG
Sbjct:    3 IGVPSVPY------RLPGSSFER-WIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSSKPIYLYINSPG--------GSVTAGMAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNP6 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.625e-15
Identity = 49/126 (38.89%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS+  + W   + +    RI++LG      +   I+A+ LYL  ED  KPIYLYINS G        G  T   AIYD M Y+K P+ T+C+G A      LL AG+KG
Sbjct:    3 IGVPSVPY------RLPGSSFER-WIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSSKPIYLYINSPG--------GSVTAGMAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_THEYD (ATP-dependent Clp protease proteolytic subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=clpP PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.257e-14
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+++G      V  +++A+ L+LQ ED EK I++YINS G        G  +   AIYD M YVKP I T C+G A   A +LL AG KG
Sbjct:   26 KDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG--------GMVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SYNAS (ATP-dependent Clp protease proteolytic subunit OS=Syntrophus aciditrophicus (strain SB) GN=clpP PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.257e-14
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG      V  LI+A+ L+L+ ED +K I+ Y+N+ G        G+ +   AIYD M Y+KPP+ T+CVG A     LLL AG +G
Sbjct:   26 KDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFFYLNTPG--------GHISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STACT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus carnosus (strain TM300) GN=clpP PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.642e-14
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG +   +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_GEOUR (ATP-dependent Clp protease proteolytic subunit OS=Geobacter uraniireducens (strain Rf4) GN=clpP PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.642e-14
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG +   +++ L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CVG A      LL  G KG
Sbjct:   25 KDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKG 109          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSF (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain FRC-32) GN=clpP PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.642e-14
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG +   +V+ L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CVG A      LL  G KG
Sbjct:   25 KDRIIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKG 109          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SYNFM (ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.144e-14
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            ++RI++LG +    V  +I+A+ L+L+ ED +K I+ YINS G        G  T   AIYD M ++KP + TLC+G A   A +LL AG KG
Sbjct:   26 RDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPG--------GLVTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAS1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.144e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_DESRM9.625e-1543.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNE79.625e-1538.89ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNP69.625e-1538.89ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THEYD1.257e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SYNAS1.257e-1441.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STACT1.642e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOUR1.642e-1443.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSF1.642e-1443.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SYNFM2.144e-1441.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAS12.144e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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