CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSL (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sulfurreducens GN=clpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.144e-14
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG      V  L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CVG A     LLL  G KG
Sbjct:   25 KDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHLYINSPG--------GVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKG 109
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_GEOMG (ATP-dependent Clp protease proteolytic subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.144e-14
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG      V  L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CVG A     LLL  G KG
Sbjct:   25 KDRIIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKG 109
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_GEOLS (ATP-dependent Clp protease proteolytic subunit OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.144e-14
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RIV+LG      V +L++A+ L+L+ ED +K I+LYINS G        G  T   AI+D M Y+K P+ T+C+G A     +LL AG KG
Sbjct:   25 KERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIFDTMNYIKAPVSTICIGQAASMGAVLLTAGEKG 109
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAHJ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.800e-14
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG +   +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.800e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG +   +V   I+++ L+LQ +D EK IYLYINS G        G  T   AIYD M ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GSVTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSM (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain M21) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.800e-14
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG     +V  L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CVG A      LL  G KG
Sbjct:   25 KDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKG 109
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_GEOBB (ATP-dependent Clp protease proteolytic subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.800e-14
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG     +V  L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CVG A      LL  G KG
Sbjct:   25 KDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKG 109
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAES (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAEQ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAAW (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MW2) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_GEOSL2.144e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOMG2.144e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOLS2.144e-1443.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAHJ2.800e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MACCJ2.800e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSM2.800e-1443.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOBB2.800e-1443.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAES3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAEQ3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAW3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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