CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_BRAJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Bradyrhizobium japonicum GN=clpP2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.699e-11
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAK 435
            K RI++L       ++ L++A+ L+L+ E+ +K I +YINS G        G  T   AIYD M +++PP+ TLC G A    +LLL AG K
Sbjct:   34 KERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISMYINSPG--------GVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEK 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_BIFLO (ATP-dependent Clp protease proteolytic subunit 1 OS=Bifidobacterium longum GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.699e-11
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   19 SGSDPIASIRIHSASPNLGAPSSPWSFLLLVEL--HGSNLHQTWHRYWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G   +A     SA     AP++ +     VE   +G      + R  +++RI++LG+    +  + ++A+ L L+ +D  + + +YINS G        G  T   AIYD M Y+KP + T+C+G A   A +LL +G KG
Sbjct:   16 AGRQGVAGFMPASARAAQPAPTNRYIMPQFVEKTPYGMKTQDAYSRL-FEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMMYINSPG--------GSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKG 148          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_BACC1 (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus cereus (strain ATCC 10987) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.699e-11
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ +G      V   ++A+ L+L+ ED EK I+LYINS G        G     FAI D M  + P + TLC+G A     LLL AGAKG
Sbjct:   26 KDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPG--------GSTXAGFAILDXMNLIXPEVQTLCMGLAASFGALLLLAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_WIGBR (ATP-dependent Clp protease proteolytic subunit OS=Wigglesworthia glossinidia brevipalpis GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+++       +  LI+A+ ++L+ ED EK I+LYINS G        G  T   +IYD M ++K  + TLC+G +   A L+L +G KG
Sbjct:   26 KERIIFVTGKIEDYMANLIIAQMIFLESEDPEKDIFLYINSPG--------GVVTSGMSIYDTMQFIKCEVSTLCIGQSSSMAALILASGEKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SULNB (ATP-dependent Clp protease proteolytic subunit OS=Sulfurovum sp. (strain NBC37-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L       V   I+A+ L+L+ +D +K IY YINS G        G  T   +++D M Y+KP I T+C+G A      LL +G KG
Sbjct:   26 KDRIIMLSGEVNDQVASSIVAQLLFLEAQDPDKDIYFYINSPG--------GVITSGLSMFDTMNYIKPDIVTICIGQAASMGAFLLASGTKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_RHOPS (ATP-dependent Clp protease proteolytic subunit OS=Rhodopseudomonas palustris (strain BisB5) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAK 435
            K RI++L       ++ L++A+ L+L+ E+ +K I +YINS G        G  T   AIYD M +++PP+ TLC G A    +LLL AG K
Sbjct:   34 KERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISMYINSPG--------GVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHK 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_RHOP2 (ATP-dependent Clp protease proteolytic subunit OS=Rhodopseudomonas palustris (strain HaA2) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAK 435
            K RI++L       ++ L++A+ L+L+ E+ +K I +YINS G        G  T   AIYD M +++PP+ TLC G A    +LLL AG K
Sbjct:   34 KERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISMYINSPG--------GVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHK 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPG (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain GB-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  L++A+ L+L+ E+ +K I+LYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGAKG
Sbjct:   42 KERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHLYINSPG--------GSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAGAKG 126          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_PROMH (ATP-dependent Clp protease proteolytic subunit OS=Proteus mirabilis (strain HI4320) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E+ EK I LYINS G        G  T   +IYD M Y+K  + T+C+G A      LL AGAKG
Sbjct:   39 KERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDINLYINSPG--------GVITAGMSIYDTMQYIKADVSTICMGQACSMGAFLLSAGAKG 123          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_NATTJ (ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+++G      +   ++A+ L+L+ ED +K I+LYINS G        G+     AIYD M Y++  + T+CVG A     +LL AG +G
Sbjct:   26 KDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPG--------GHVHAGLAIYDTMQYIRSDVSTICVGMAASMGAVLLAAGNEG 110          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP2_BRAJA1.699e-1139.13ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_BIFLO1.699e-1130.28ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_BACC11.699e-1141.94ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_WIGBR2.219e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SULNB2.219e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RHOPS2.219e-1139.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RHOP22.219e-1139.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEPG2.219e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PROMH2.219e-1140.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NATTJ2.219e-1136.56ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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