CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_MAGSA (ATP-dependent Clp protease proteolytic subunit OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=clpP PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       V  LI A+ L+L+ E+  K I  YINS G        G  T   AIYD M Y++P + T+C+G A    +LL+ AG KG
Sbjct:   27 KERIIFLTGQVYDEVASLICAQLLFLESENPSKDIAFYINSPG--------GVVTSGLAIYDTMQYIRPKVSTVCIGQAASMGSLLMTAGEKG 111          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBA (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+ L        + LI+++ L+L+ ED +K I +YINS G        G  T   AIYD M Y+KP + T+CVG A      LL +GAKG
Sbjct:   26 KERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPG--------GSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLSSGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_RHOBA (ATP-dependent Clp protease proteolytic subunit 2 OS=Rhodopirellula baltica GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG      ++  ++A+ L+LQ +D +K I++YINS G        G  T   AIYD M +V   + T C+G A     +LL AGAKG
Sbjct:   26 KDRIIFLGQQVDDQISNALVAQMLFLQADDPKKDIHMYINSPG--------GSITAGMAIYDTMQFVSCDVATYCIGQAASMGAVLLTAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_WOLWR (ATP-dependent Clp protease proteolytic subunit OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+++      ++  +I+A+ L+L+ E+ +K I +YINS G        G  T   +IYD M Y+ P + TLC+G A    +LLL AG KG
Sbjct:   26 KERIIFVTGPIEDNMASVIVAQLLFLESENPDKDICMYINSPG--------GVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_TERTT (ATP-dependent Clp protease proteolytic subunit OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  L++A+ L+L+ E+ +K I+LYINS G        G  T   +IYD M ++KP + T+C+G A    + LL AGA G
Sbjct:   41 KERVIFLVGQVEDHMANLVVAQLLFLEAENPDKDIHLYINSPG--------GSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGSFLLSAGATG 125          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_OLICO (ATP-dependent Clp protease proteolytic subunit OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAK 435
            K RI+++       ++ LI+A+ L+L+ E+ +K I +YINS G        G  T   AIYD M +++PP+ TLC G A    +LLL AG K
Sbjct:   34 KERIIFVTGPVEDGMSTLIVAQLLFLEAENPKKEISMYINSPG--------GVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEK 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_NITWN (ATP-dependent Clp protease proteolytic subunit OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAK 435
            K RI+++      +++ L++A+ L+L+ E+ +K I +YINS G        G  T   AIYD M +++PP+ TLC G A    +LLL AG K
Sbjct:   34 KERIIFVTGGVEDNMSMLVVAQLLFLEAENPKKEISMYINSPG--------GVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEK 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_MARMS (ATP-dependent Clp protease proteolytic subunit OS=Marinomonas sp. (strain MWYL1) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  L++A+ L+L+ E+ +K I+LYINS G        G  T   +IYD M ++KP + T+C+G A     LLL AGA G
Sbjct:   41 KERVIFLVGQVEDHMANLVVAQLLFLESENPDKDIHLYINSPG--------GSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLTAGAAG 125          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_MAGSM (ATP-dependent Clp protease proteolytic subunit OS=Magnetococcus sp. (strain MC-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+V+L       +  L++A+ L+L+ E+ EK I+LYINS G        G  T   AIYD M +++P + TLC+G A     +LL AG  G
Sbjct:   26 KERVVFLVGQVEEHMANLVVAQLLFLESENPEKDIHLYINSPG--------GSVTAGMAIYDTMQFIRPSVSTLCIGQAASMGAVLLAAGEAG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_HELHP (ATP-dependent Clp protease proteolytic subunit OS=Helicobacter hepaticus GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 37/93 (39.78%), Postives = 49/93 (52.69%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L       +   I+A+ L+L+ ED EK I  YINS G        G  T AF+IYD M Y+   I T+C+G A      LL +G KG
Sbjct:   27 KDRIILLSGEINDHIASSIVAQLLFLEAEDPEKDINFYINSPG--------GVITSAFSIYDTMNYIHSDISTICIGQAASAGAFLLSSGTKG 111          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_MAGSA2.219e-1139.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBA2.219e-1140.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_RHOBA2.219e-1138.71ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_WOLWR2.898e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_TERTT2.898e-1136.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_OLICO2.898e-1139.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NITWN2.898e-1138.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MARMS2.898e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MAGSM2.898e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HELHP2.898e-1139.78ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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