CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_PSYA2 (ATP-dependent Clp protease proteolytic subunit OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            + R+++L       +  LI+A+ L+L+ E+ +K I+LYINS G        G  +   AI+D M ++KP + T+C+G A+   + LL AG KG
Sbjct:   54 RERVIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPG--------GSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGQKG 138          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_PHOPR (ATP-dependent Clp protease proteolytic subunit OS=Photobacterium profundum GN=clpP PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  L++A+ L+L+ E+ +K I+LYINS G        G  T   +IYD M ++KP + T+C+G A      LL  GAKG
Sbjct:   31 KERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPG--------GSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKG 115          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_NEIMF (ATP-dependent Clp protease proteolytic subunit OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RIV+L          L++A+ L+L+ E+ +K I+ YINS G        G  T   +IYD M ++KP + TLC+G A      LL AG KG
Sbjct:   30 KERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFFYINSPG--------GSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKG 114          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_NEIMB (ATP-dependent Clp protease proteolytic subunit OS=Neisseria meningitidis serogroup B GN=clpP PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RIV+L          L++A+ L+L+ E+ +K I+ YINS G        G  T   +IYD M ++KP + TLC+G A      LL AG KG
Sbjct:   30 KERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFFYINSPG--------GSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKG 114          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_NEIMA (ATP-dependent Clp protease proteolytic subunit OS=Neisseria meningitidis serogroup A GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RIV+L          L++A+ L+L+ E+ +K I+ YINS G        G  T   +IYD M ++KP + TLC+G A      LL AG KG
Sbjct:   30 KERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFFYINSPG--------GSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKG 114          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_NEIM0 (ATP-dependent Clp protease proteolytic subunit OS=Neisseria meningitidis serogroup C (strain 053442) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RIV+L          L++A+ L+L+ E+ +K I+ YINS G        G  T   +IYD M ++KP + TLC+G A      LL AG KG
Sbjct:   30 KERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFFYINSPG--------GSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKG 114          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_NEIG1 (ATP-dependent Clp protease proteolytic subunit OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RIV+L          L++A+ L+L+ E+ +K I+ YINS G        G  T   +IYD M ++KP + TLC+G A      LL AG KG
Sbjct:   30 KERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFFYINSPG--------GSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKG 114          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_HAHCH (ATP-dependent Clp protease proteolytic subunit OS=Hahella chejuensis (strain KCTC 2396) GN=clpP PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  L++A+ L+L+ E+ +K I+LYINS G        G  T   +IYD M ++KP + T+C+G A     LLL  GA G
Sbjct:   33 KERIIFLVGQVEDHMANLVVAQLLFLESENPDKDIHLYINSPG--------GSVTAGLSIYDTMQFIKPDVSTMCIGQAASMGALLLSGGAAG 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_DESDA (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 38/93 (40.86%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV LG     +V  LI A+ L+L+ +D EK I LYINS G        G  T   AIYD + ++  P+ T+C+G A      LL AG  G
Sbjct:   26 KDRIVLLGSEVNDTVASLICAQLLFLESQDPEKEISLYINSPG--------GSVTAGLAIYDTLRFISAPVSTVCMGRAASMGAFLLAAGKPG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_BAUCH (ATP-dependent Clp protease proteolytic subunit OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+++       +  +I+A+ ++L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T C+G A      LL AG KG
Sbjct:   37 KERIIFMTGKVEDYMANIIVAQMIFLEAENPEKDIYLYINSPG--------GNITSGMSIYDTMQFIKPNVSTFCMGQAASMGAFLLAAGTKG 121          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_PSYA23.785e-1135.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PHOPR3.785e-1136.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NEIMF3.785e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NEIMB3.785e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NEIMA3.785e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NEIM03.785e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NEIG13.785e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAHCH3.785e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESDA3.785e-1140.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BAUCH3.785e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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