CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_AZOSE (ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp. (strain EbN1) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L          LI+A+ L+L+ E+ +K +Y YINS G        G  +   AIYD M ++KP + TLC+G A    + LL AG KG
Sbjct:   42 KERVIFLVGPVNDVTANLIVAQLLFLESENPDKDVYFYINSPG--------GSVSSGMAIYDTMQFIKPSVSTLCIGQAASMGSFLLAAGEKG 126          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP4_RHOSR (ATP-dependent Clp protease proteolytic subunit 4 OS=Rhodococcus sp. (strain RHA1) GN=clpP4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  166 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            RIV+LG      V  +++A+ L+LQ +  ++ I LYINS G        G  T   AIYD M +++P I T C+G A   A +LL AG KG
Sbjct:   30 RIVFLGTEIDDGVANVVMAQLLHLQADSSDQEIGLYINSPG--------GSTTAMLAIYDTMQFLRPTIATYCMGQAASAAAVLLAAGTKG 112          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            + RIV+LG     +V + I+A+ L+L+ ED EK I LYINS G        G  T   AIYD M  V P + T+C G A      LL  GA+G
Sbjct:   60 RERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPG--------GSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQG 144          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMA (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus GN=clpP3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 37/93 (39.78%), Postives = 49/93 (52.69%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            + RI++LG      + + ++A+ L+L+ ED EK I LYINS G        G  T   AIYD M  V P I T+C G A      LL  G+KG
Sbjct:   48 RERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDIQLYINSPG--------GSVTAGLAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKG 132          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            + RIV+LG     +V + I+A+ L+L+ ED EK I LYINS G        G  T   AIYD M  V P + T+C G A      LL  GA+G
Sbjct:   60 RERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPG--------GSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQG 144          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_SYMTH (ATP-dependent Clp protease proteolytic subunit 1 OS=Symbiobacterium thermophilum GN=clpP1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAG 429
            K+RIV+LG      V  +++A+ L+L+ ED +KP+ LYINS G        G  +    IYD M ++K P+ T  VG A   A LLL AG
Sbjct:   27 KDRIVFLGTPIDDQVANVVIAQLLFLESEDPDKPVNLYINSPG--------GSVSAGLGIYDAMQHIKSPVNTTVVGMAASMAALLLAAG 108          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_XANOR (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas oryzae pv. oryzae GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  +I+A+ L+L+ ++ EK I +YINS G        G  T   AIYD M Y+KP + T+CVG A     LLL +GA G
Sbjct:   33 KERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPG--------GVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAG 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_XANOP (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  +I+A+ L+L+ ++ EK I +YINS G        G  T   AIYD M Y+KP + T+CVG A     LLL +GA G
Sbjct:   33 KERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPG--------GVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAG 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_XANOM (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  +I+A+ L+L+ ++ EK I +YINS G        G  T   AIYD M Y+KP + T+CVG A     LLL +GA G
Sbjct:   33 KERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPG--------GVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAG 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_XANCP (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas campestris pv. campestris GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  +I+A+ L+L+ ++ EK I +YINS G        G  T   AIYD M Y+KP + T+CVG A     LLL +GA G
Sbjct:   33 KERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPG--------GVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAG 117          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_AZOSE3.785e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP4_RHOSR3.785e-1140.66ATP-dependent Clp protease proteolytic subunit 4 O... [more]
CLPP3_SYNP63.785e-1141.94ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP3_PROMA3.785e-1139.78ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNE73.785e-1141.94ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYMTH3.785e-1141.11ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_XANOR4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANOP4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANOM4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANCP4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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