CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_XANCB (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas campestris pv. campestris (strain B100) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  +I+A+ L+L+ ++ EK I +YINS G        G  T   AIYD M Y+KP + T+CVG A     LLL +GA G
Sbjct:   33 KERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPG--------GVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAG 117
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_XANC8 (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas campestris pv. campestris (strain 8004) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  +I+A+ L+L+ ++ EK I +YINS G        G  T   AIYD M Y+KP + T+CVG A     LLL +GA G
Sbjct:   33 KERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPG--------GVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAG 117
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_XANC5 (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  +I+A+ L+L+ ++ EK I +YINS G        G  T   AIYD M Y+KP + T+CVG A     LLL +GA G
Sbjct:   33 KERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPG--------GVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAG 117
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_XANAC (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas axonopodis pv. citri GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  +I+A+ L+L+ ++ EK I +YINS G        G  T   AIYD M Y+KP + T+CVG A     LLL +GA G
Sbjct:   33 KERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPG--------GVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAG 117
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_WOLPP (ATP-dependent Clp protease proteolytic subunit OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+++      ++  +I+A+ L+L+ E+ +K I +YINS G        G  T   +IYD M Y+ P + TLC+G A    +LLL AGA+G
Sbjct:   26 KERIIFVTGPIEDNMASVIVAQLLFLESENPDKDICMYINSPG--------GVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLTAGAEG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_WOLPM (ATP-dependent Clp protease proteolytic subunit OS=Wolbachia pipientis wMel GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+++      ++  +I+A+ L+L+ E+  K I +YINS G        G  T   +IYD M Y+ P + TLC+G A    +LLL AG KG
Sbjct:   26 KERIIFVTGPIEDNMASVIVAQLLFLESENPNKDICMYINSPG--------GVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHESW (ATP-dependent Clp protease proteolytic subunit OS=Shewanella sp. (strain W3-18-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHESR (ATP-dependent Clp protease proteolytic subunit OS=Shewanella sp. (strain MR-7) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHESM (ATP-dependent Clp protease proteolytic subunit OS=Shewanella sp. (strain MR-4) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHESA (ATP-dependent Clp protease proteolytic subunit OS=Shewanella sp. (strain ANA-3) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_XANCB4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANC84.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANC54.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANAC4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_WOLPP4.943e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_WOLPM4.943e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHESW4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHESR4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHESM4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHESA4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
back to top