CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHEPC (ATP-dependent Clp protease proteolytic subunit OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHEON (ATP-dependent Clp protease proteolytic subunit OS=Shewanella oneidensis GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB9 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS195) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB8 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS185) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB5 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB2 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS223) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ E  +K I+LYINS G        G  T   AIYD M ++KP + T+C+G A      LL  G KG
Sbjct:   34 KERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPG--------GSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKG 118          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_EHRCJ (ATP-dependent Clp protease proteolytic subunit OS=Ehrlichia canis (strain Jake) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+++       +  L++A+ ++L+ E+ EK I +YINS G        G  T   +IYD M Y+KP + TLC+G A    +LLL AG  G
Sbjct:   26 KERIIFITGPIEDQMASLVVAQLVFLEAENPEKEICMYINSPG--------GVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CAUSK (ATP-dependent Clp protease proteolytic subunit OS=Caulobacter sp. (strain K31) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI A+ L+L+ E+ +K I +YINS G        G  T   AIYD M Y+K P+ T+C+G A    +LLL AGA G
Sbjct:   34 KERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAMYINSPG--------GVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLQAGAPG 118          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ANAMM (ATP-dependent Clp protease proteolytic subunit OS=Anaplasma marginale (strain St. Maries) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+++  +   ++  LI+A+ ++L+ E+ EK I LYINS G        G  T   +IYD M Y+KP + TLC+G A     LLL  G  G
Sbjct:   43 KERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISLYINSPG--------GVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPG 127          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ANAMF (ATP-dependent Clp protease proteolytic subunit OS=Anaplasma marginale (strain Florida) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+++  +   ++  LI+A+ ++L+ E+ EK I LYINS G        G  T   +IYD M Y+KP + TLC+G A     LLL  G  G
Sbjct:   43 KERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISLYINSPG--------GVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPG 127          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_SHEPC4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEON4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB94.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB84.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB54.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB24.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EHRCJ4.943e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAUSK4.943e-1140.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANAMM4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANAMF4.943e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
back to top