CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ALHEH (ATP-dependent Clp protease proteolytic subunit OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ E+ +K I++YINS G        G  T   AIYD M ++KP + T+C+G A     LLL  G KG
Sbjct:   41 KERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIHIYINSPG--------GAVTAGLAIYDTMQFIKPDVSTVCIGQAASMGALLLTGGTKG 125          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_TROW8 (ATP-dependent Clp protease proteolytic subunit 2 OS=Tropheryma whipplei (strain TW08/27) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  157 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +++RIV+LG+    +  + ++A+ L L+ +D E+ I +YINS G        G  T   AIYD M Y++P I T+C+G A   A ++L AG  G
Sbjct:   30 FEDRIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIMYINSPG--------GSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPG 115          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_RHIL3 (ATP-dependent Clp protease proteolytic subunit 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAK 435
            K RI++L  +    +  L+ A+ L+L+ E+ +K I LYINS G        G  T   AIYD M ++KP + TLC+G A    +LLL AG K
Sbjct:   26 KERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIALYINSPG--------GVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHK 109          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_RHIEC (ATP-dependent Clp protease proteolytic subunit 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAK 435
            K RI++L  +    +  L+ A+ L+L+ E+ +K I LYINS G        G  T   AIYD M ++KP + TLC+G A    +LLL AG K
Sbjct:   34 KERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIALYINSPG--------GVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHK 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_TROWT (ATP-dependent Clp protease proteolytic subunit 1 OS=Tropheryma whipplei (strain Twist) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  157 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +++RIV+LG+    +  + ++A+ L L+ +D E+ I +YINS G        G  T   AIYD M Y++P I T+C+G A   A ++L AG  G
Sbjct:   30 FEDRIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIMYINSPG--------GSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPG 115          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_PSEAE (ATP-dependent Clp protease proteolytic subunit 1 OS=Pseudomonas aeruginosa GN=clpP1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  L++A+ L+L+ E+ EK I+LYINS G        G  T   +IYD M ++KP + T C+G A     LLL  GA G
Sbjct:   42 KERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYINSPG--------GSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAG 126          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_RUBXD (ATP-dependent Clp protease proteolytic subunit OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.456e-11
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG      V   I+A+ L+L+ ED E+ I LYINS G        G  +   AIYD M +VKP I T  +G A      LL AG KG
Sbjct:   32 KDRIIFLGTPVDDQVANAIMAQLLHLESEDPEQDINLYINSPG--------GSVSAGLAIYDTMQFVKPDIVTTALGMAASMGAFLLAAGTKG 116          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_RALEJ (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia eutropha (strain JMP134) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.456e-11
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+V+L          L++A+ L+L+ E+ +K I LYINS G        G  +   AIYD M +VKP + TLC+G A      LL AGAKG
Sbjct:   48 KERVVFLVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPG--------GSVSAGLAIYDTMQFVKPDVQTLCMGMAASMGAFLLAAGAKG 132          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_PSEE4 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas entomophila (strain L48) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.456e-11
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  L++A+ L+L+ E+ +K I+LYINS G        G  T   +IYD M ++KP + T+C+G A      LL AGA G
Sbjct:   42 KERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPG--------GSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAAG 126          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_NITOC (ATP-dependent Clp protease proteolytic subunit OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=clpP PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.456e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+V+L       +  L++A+ L+L+ E+ +K I+LYINS G        G  T   +IYD M ++KP + TLCVG A     +LL  GA G
Sbjct:   31 KERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPG--------GSVTAGLSIYDTMQFIKPDVSTLCVGQAASMGAVLLAGGAGG 115          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_ALHEH4.943e-1137.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_TROW84.943e-1137.23ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_RHIL34.943e-1140.22ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_RHIEC4.943e-1140.22ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_TROWT4.943e-1137.23ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_PSEAE4.943e-1138.71ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_RUBXD6.456e-1141.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RALEJ6.456e-1140.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEE46.456e-1136.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NITOC6.456e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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