CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6946 contig Csv1_Contig6946:175..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAAT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAAS (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MSSA476) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAAR (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MRSA252) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAAN (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain N315) GN=clpP PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAAM (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpP PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAAE (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Newman) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAAC (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain COL) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAAB (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAA9 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH9) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAA8 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain NCTC 8325) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_STAAT3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAS3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAR3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAN3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAM3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAE3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAC3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAB3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA93.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA83.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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