CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_HAEIN (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus influenzae GN=clpP PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ ED  K I +YINS G        G  T   AIYD M ++KP I TLC+G A      LL  G  G
Sbjct:   26 KERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPG--------GSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_HAEIG (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus influenzae (strain PittGG) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ ED  K I +YINS G        G  T   AIYD M ++KP I TLC+G A      LL  G  G
Sbjct:   26 KERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPG--------GSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_HAEIE (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus influenzae (strain PittEE) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ ED  K I +YINS G        G  T   AIYD M ++KP I TLC+G A      LL  G  G
Sbjct:   26 KERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPG--------GSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_HAEI8 (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus influenzae (strain 86-028NP) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K R+++L       +  LI+A+ L+L+ ED  K I +YINS G        G  T   AIYD M ++KP I TLC+G A      LL  G  G
Sbjct:   26 KERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPG--------GSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_DINSH (ATP-dependent Clp protease proteolytic subunit OS=Dinoroseobacter shibae (strain DFL 12) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RIV++       +++L++A+ L+L+ E+  K I +YINS G        G  T   +IYD M Y+KP + TL VG A    +LLL AG KG
Sbjct:   34 KERIVFVNGPVHDGMSQLVVAQLLHLEAENPSKEISMYINSPG--------GVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEKG 118          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBB (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+ L        + LI+++ L+L+ ED +K I +YINS G        G  T   AIYD M Y+KP + T+CVG A      LL +GA G
Sbjct:   26 KERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPG--------GSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLSSGANG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            + RI++LG     +V + ++A+ L+L+ ED EK I +YINS G        G  T   AIYD M  V P + T+C G A      LL  G KG
Sbjct:   31 RERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPG--------GSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKG 115          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNPX (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain WH8102) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            + RI++LG     +V + ++A+ L+L+ ED EK I +YINS G        G  T   AIYD M  V P + T+C G A      LL  G KG
Sbjct:   48 RERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPG--------GSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKG 132          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_HAEIN8.432e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEIG8.432e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEIE8.432e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEI88.432e-1138.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DINSH8.432e-1139.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBB8.432e-1139.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_SYNSC8.432e-1138.71ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNPX8.432e-1138.71ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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