CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6946 contig Csv1_Contig6946:175..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAA3 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAA2 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH1) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_STAA1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL AGAKG
Sbjct:   26 KDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_LEPIN (ATP-dependent Clp protease proteolytic subunit OS=Leptospira interrogans GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG +       +I A+ L+L+ E+ E+ IYLY+NS G        GY +   AIYD M Y+KP + TLC+G A   A LLL  GA G
Sbjct:   26 KDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPG--------GYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_HALOH (ATP-dependent Clp protease proteolytic subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG      ++ LI+A+ L+L+ ED +K I+LYINS G        G  T A A+YD + Y+KP + T+C+G A     LLL +G KG
Sbjct:   26 KDRIVFLGHPINDELSNLIIAQLLFLEAEDPDKDIHLYINSPG--------GSVTAALAMYDTIQYIKPDVATICMGQAASAGALLLASGTKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLONN (ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi (strain NT) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG         L++A+ L+L+ ED +K IYLYINS G        G  T   AIYD M Y+KP + T+C+G A      LL AGAKG
Sbjct:   26 KDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPG--------GSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_BRAHW (ATP-dependent Clp protease proteolytic subunit OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 42/93 (45.16%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG      V  +++A+ L+L+  D EK I LYINS G        G  T A  +YD M YVKP + TLCVG A     LLL  GAKG
Sbjct:   30 KDRIIFLGGEINDDVANVVIAQLLFLESADPEKDISLYINSPG--------GVVTAALGMYDTMQYVKPDVATLCVGQAASAGALLLAGGAKG 114
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_LEPIC (ATP-dependent Clp protease proteolytic subunit 1 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpP1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG +       +I A+ L+L+ E+ E+ IYLY+NS G        GY +   AIYD M Y+KP + TLC+G A   A LLL  GA G
Sbjct:   26 KDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPG--------GYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOAB (ATP-dependent Clp protease proteolytic subunit OS=Clostridium acetobutylicum GN=clpP PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.777e-14
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+R+++LG     +   L++A+ L+L+ ED +K IYLYINS G        G  T   AIYD M YVKP + T+C+G A    + LL AGA G
Sbjct:   26 KDRVIFLGEEVNDTTASLVVAQLLFLESEDPDKDIYLYINSPG--------GSITSGMAIYDTMQYVKPDVSTICIGMAASMGSFLLTAGAPG 110
[Close]
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_THELT (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=clpP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.239e-14
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG +    V  L++A+ L+L+ ED +K I LYINS G        G  T   AIYD M Y+K  + T+CVG A   A +LL +G KG
Sbjct:   30 KDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQLYINSPG--------GSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKG 114
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_STAA33.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA23.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA13.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPIN3.657e-1443.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HALOH3.657e-1443.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLONN3.657e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BRAHW3.657e-1445.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_LEPIC3.657e-1443.01ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_CLOAB4.777e-1443.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THELT6.239e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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