CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_DESVM (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 43/93 (46.24%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG      V  LI A+ L+L+ E+ EK IYLYINS G        G  T   AIYD M Y+  P+ TLC+G A     LLL AGA G
Sbjct:   25 KDRIILLGTPIDDQVASLICAQLLFLESENPEKEIYLYINSPG--------GSVTAGMAIYDTMQYITSPVATLCLGQAASMGALLLAAGAPG 109          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_AQUAE (ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus GN=clpP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            ++RIV LG      V  LI+A+ L+L+ +D +K IYLYINS G        G  T   AIYD M Y+KP + T+C+G A     +LL AGA G
Sbjct:   33 QDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYLYINSPG--------GSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPG 117          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ACTPJ (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC G A      LL  GAKG
Sbjct:   26 KERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ACTP7 (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC G A      LL  GAKG
Sbjct:   26 KERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ACTP2 (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC G A      LL  GAKG
Sbjct:   26 KERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMM (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 50/126 (39.68%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS + + W   + +    RI++LG      V   ++A+ LYL  ED  KPIYLYINS G        G  T   AIYD M YVK  + T+CVG A      LL AG KG
Sbjct:    3 IGTPSVPY------RLPGSQMER-WVDIYTRLGVERILFLGQEVSDGVANSLVAQMLYLDSEDSTKPIYLYINSPG--------GSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLTAGTKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_BACHD (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus halodurans GN=clpP2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG +    +   I+A+ L+L+ E+ +K IYLYINS G        G  +  FAIYD M +VKP I T+C G A   A +LL AG KG
Sbjct:   27 KDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIYLYINSPG--------GSTSAGFAIYDTMQFVKPSIHTICTGMAASFAAILLLAGTKG 111          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_MYXXD (ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 48/120 (40.00%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   79 PSSPWSFLLLVELHGSNLHQTWHRYWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            P  P  +++     G   +  + R   K+RIV LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVK P+ T+CVG A     +LL AGAKG
Sbjct:    2 PFMPVPYVIEQTHRGERSYDIYSRL-LKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKG 112          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXD (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.064e-13
Identity = 44/93 (47.31%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVK P+ T+CVG A     LLL AGAKG
Sbjct:   25 KDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPG--------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKG 109          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.064e-13
Identity = 44/93 (47.31%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVK P+ T+CVG A     +LL AGAKG
Sbjct:   28 KDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKG 112          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_DESVM8.148e-1446.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AQUAE8.148e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTPJ8.148e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTP78.148e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTP28.148e-1444.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMM8.148e-1439.68ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BACHD8.148e-1445.16ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_MYXXD8.148e-1440.00ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP2_MYXXD1.064e-1347.31ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_MYXXA1.064e-1347.31ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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