CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6946 contig Csv1_Contig6946:175..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP1_BACHD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus halodurans GN=clpP1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.064e-13
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ LG +   +V   I+A+ L+LQ ED +K I LYINS G        G  T   AIYD M Y+KP + T+C+G A      LL AGAKG
Sbjct:   26 KDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPG--------GSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_MOOTA (ATP-dependent Clp protease proteolytic subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG +    V  L++A+ L+L+ ED +K I+LYINS G        G  +   AI+D M Y++P + T+CVG A      LL AGAKG
Sbjct:   27 KDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPG--------GSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKG 111          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_DESMR (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            ++RI+ LG +    V  LI A+ L+L+ ED EK I++YINS G        G  +   AIYD M YV PP+ TLC+G A     LLL AGA G
Sbjct:   26 RDRIILLGSAVDDYVANLICAQLLFLESEDPEKEIFMYINSPG--------GVVSAGLAIYDTMQYVMPPVSTLCLGQAASMGALLLCAGATG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMT (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13
Identity = 49/126 (38.89%), Postives = 62/126 (49.21%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS   + W   + +    RI++LG      +   ++A+ LYL  ED  KPIYLYINS G        G  T   AIYD M YVK  + T+CVG A      LL AG KG
Sbjct:    3 IGTPSVPY------RLPGSQFER-WVDIYTRLGAERILFLGQEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPG--------GSVTAGLAIYDTMKYVKSDLVTICVGLAASMGAFLLSAGTKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMP (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13
Identity = 48/126 (38.10%), Postives = 64/126 (50.79%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS  ++ W   + +    RI++LG      +   ++A+ LYL  +D  KPIYLYINS G        G  T   AIYD + YVK  + T+CVG A      LLGAG KG
Sbjct:    3 IGTPSVPY------RLPGSQ-YERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNTKPIYLYINSPG--------GSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLGAGTKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_ARATH (ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis thaliana GN=CLPP2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+ +        + +++A+ LYL+ E+  KPI++Y+NS G        G+ T   AIYD M Y++ PI T+C+G A   A+LLL AGAKG
Sbjct:   55 KERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPG--------GHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKG 139          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_HAEDU (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus ducreyi GN=clpP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.815e-13
Identity = 40/93 (43.01%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++L       +  LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC G A      LL  G KG
Sbjct:   26 KERIIFLNGEVEDHMANLIVAQLLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGKKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CAMHC (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.815e-13
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV L       V   ++A+ L+L+ ED +K IYLYINS G        G  T  F+IYD M Y+KP + T+C+G A      LL  G KG
Sbjct:   25 KDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYLYINSPG--------GVVTSGFSIYDTMNYIKPAVSTICIGQAASMGAFLLSCGEKG 109          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SULDN (ATP-dependent Clp protease proteolytic subunit OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L      +V   I+A+ L+L+ ED EK IY YINS G        G  T   AIYD M Y++P + T+CVG A      LL +GAKG
Sbjct:   26 KDRIIMLSGEVNDAVASSIVAQMLFLEAEDPEKDIYFYINSPG--------GVVTAGMAIYDTMNYIRPDVATICVGQAASMGAFLLSSGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_LAWIP (ATP-dependent Clp protease proteolytic subunit OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 42/92 (45.65%), Postives = 51/92 (55.43%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAK 435
            K+RIV LG      V  LI A+ L+L+ +D EK IYLYINS G        G  T   AIYD M Y+ P + T+C+G A     LLL AG K
Sbjct:   31 KDRIVLLGTEVNDQVASLICAQLLFLESQDPEKEIYLYINSPG--------GSVTAGLAIYDTMNYITPNVATVCMGRAASMGALLLAAGEK 114          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP1_BACHD1.064e-1345.16ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_MOOTA1.390e-1341.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESMR1.390e-1345.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMT1.390e-1338.89ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_PROMP1.390e-1338.10ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_ARATH1.390e-1340.86ATP-dependent Clp protease proteolytic subunit 2, ... [more]
CLPP_HAEDU1.815e-1343.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMHC1.815e-1341.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SULDN2.371e-1343.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LAWIP2.371e-1345.65ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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