CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6946 contig Csv1_Contig6946:175..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBL (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L      +   LI+A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+KP + T+CVG A      LL AGAKG
Sbjct:   26 KDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPG--------GSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBK (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Okra / Type B1) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L      +   LI+A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+KP + T+CVG A      LL AGAKG
Sbjct:   26 KDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPG--------GSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBJ (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Kyoto / Type A2) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L      +   LI+A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+KP + T+CVG A      LL AGAKG
Sbjct:   26 KDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPG--------GSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBH (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L      +   LI+A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+KP + T+CVG A      LL AGAKG
Sbjct:   26 KDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPG--------GSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOB1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L      +   LI+A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+KP + T+CVG A      LL AGAKG
Sbjct:   26 KDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPG--------GSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ANADF (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain Fw109-5) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 1
Query:   79 PSSPWSFLLLVELHGSNLHQTWHRYWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            P  P  +++     G   +  + R   K+RIV+LG      V  +++A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+G A      LL  GA G
Sbjct:    2 PYIPMPYVVEQTHRGERSYDIYSRL-LKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAG 112          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ALKMQ (ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus metalliredigens (strain QYMF) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI++LG         L++A+ L+L+ ED +K I +YINS G        G  T   AIYD M Y+KP + T+CVG A      LL AGAKG
Sbjct:   26 KERIIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPG--------GSITAGMAIYDTMNYIKPDVSTICVGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNSC (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9605) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 48/126 (38.10%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS + + W   + +    RI++LG      +   ++A+ LYL  ED  KPIYLYINS G        G  T   AIYD + YVK  + T+CVG A      LL AG KG
Sbjct:    3 IGTPSVPY------RLPGSQMER-WVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPG--------GSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNS9 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9902) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 48/126 (38.10%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS + + W   + +    RI++LG      +   ++A+ LYL  ED  KPIYLYINS G        G  T   AIYD + YVK  + T+CVG A      LL AG KG
Sbjct:    3 IGTPSVPY------RLPGSQMER-WVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPG--------GSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKG 113          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNPX (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain WH8102) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 48/126 (38.10%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS + + W   + +    RI++LG      +   ++A+ LYL  ED  KPIYLYINS G        G  T   AIYD + YVK  + T+CVG A      LL AG KG
Sbjct:    3 IGTPSVPY------RLPGSQMER-WVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPG--------GSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKG 113          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP_CLOBL2.371e-1344.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBK2.371e-1344.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBJ2.371e-1344.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBH2.371e-1344.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOB12.371e-1344.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANADF2.371e-1336.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ALKMQ2.371e-1343.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNSC2.371e-1338.10ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP3_SYNS92.371e-1338.10ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP3_SYNPX2.371e-1338.10ATP-dependent Clp protease proteolytic subunit 3 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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