CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            ++RI++LG      +  LI+A+ LYL+ ED EK IYLYINS G        G      AIYD M +++P + T+C+G A      LL  GAKG
Sbjct:   24 RDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG--------GSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKG 108          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMA (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 49/125 (39.20%), Postives = 61/125 (48.80%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAK 435
            +G PS P+       L GS   + W   + +    RI++LG      V   ++A+ LYL  ED  KPIYLYINS G        G  T   AIYD M YVK  + T+CVG A      LL AG K
Sbjct:    3 IGTPSVPY------RLPGSQFER-WVDIYTRLGAERILFLGQEVTDGVANSLVAQMLYLDSEDSTKPIYLYINSPG--------GSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLSAGTK 112          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI++LG     +V  L++A+ L+L+ ED +K I LYINS G        G  T   AIYD + Y++P + T+CVG A      LL AG KG
Sbjct:   27 KDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPG--------GSITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKG 111          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_DESVV (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 42/93 (45.16%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV LG      V  LI A+ L+L+ E+ EK I++YINS G        G  T   AIYD M Y+  P+ TLC+G A     LLL AGA G
Sbjct:   25 KDRIVLLGTPIDDQVASLICAQLLFLESENPEKEIHMYINSPG--------GSVTAGMAIYDTMQYINSPVSTLCMGQAASMGALLLAAGAPG 109          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_DESVH (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 42/93 (45.16%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV LG      V  LI A+ L+L+ E+ EK I++YINS G        G  T   AIYD M Y+  P+ TLC+G A     LLL AGA G
Sbjct:   25 KDRIVLLGTPIDDQVASLICAQLLFLESENPEKEIHMYINSPG--------GSVTAGMAIYDTMQYINSPVSTLCMGQAASMGALLLAAGAPG 109          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_CLOTH (ATP-dependent Clp protease proteolytic subunit OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+ L          L++A+ L+L+ ED +K I LYINS G        G  T  FAIYD M YVKP + T+C+G A      LL AGAKG
Sbjct:   26 KDRIIVLSDEINDVTASLVVAQMLFLEAEDPDKDIQLYINSPG--------GSVTAGFAIYDTMQYVKPDVSTICIGMAASMGAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ANASK (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain K) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 1
Query:   79 PSSPWSFLLLVELHGSNLHQTWHRYWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            P  P  +++     G   +  + R   K+RI++LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+G A      LL  GA G
Sbjct:    2 PYIPMPYVVEQTHRGERSYDIYSRL-LKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAG 112          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ANADE (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 1
Query:   79 PSSPWSFLLLVELHGSNLHQTWHRYWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            P  P  +++     G   +  + R   K+RI++LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+G A      LL  GA G
Sbjct:    2 PYIPMPYVVEQTHRGERSYDIYSRL-LKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAG 112          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_ANAD2 (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 1
Query:   79 PSSPWSFLLLVELHGSNLHQTWHRYWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            P  P  +++     G   +  + R   K+RI++LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+G A      LL  GA G
Sbjct:    2 PYIPMPYVVEQTHRGERSYDIYSRL-LKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAG 112          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNY3 (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Synechocystis sp. (strain PCC 6803) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 48/126 (38.10%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   70 LGAPSSPWSFLLLVELHGSNLHQTWHRYWYK---NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            +G PS P+       L GS  ++ W   + +    RI++LG     S+   I+A  LYL  +D  KPIYLYINS G        G  T   AIYD M Y+K  + T+CVG A      LL +GA G
Sbjct:    3 IGVPSVPF------RLPGSQ-YERWIDIYTRLSQERIIFLGQEVNDSIANRIVAFLLYLDSDDPSKPIYLYINSPG--------GSVTAGMAIYDTMQYIKAEVITICVGLAASMGAFLLASGAPG 113          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPP2_SYNJA2.371e-1341.94ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_PROMA2.371e-1339.20ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_SYNWW3.096e-1341.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESVV3.096e-1345.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESVH3.096e-1345.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOTH3.096e-1344.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANASK3.096e-1336.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANADE3.096e-1336.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANAD23.096e-1336.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNY33.096e-1338.10Probable ATP-dependent Clp protease proteolytic su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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