CN185830

Overview
NameCN185830
Unique NameCN185830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:12..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 255.373 bits (651), Expect = 2.747e-67
Identity = 127/164 (77.44%), Postives = 135/164 (82.32%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  PV Q  G C
Sbjct:   41 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.044e-66
Identity = 127/165 (76.97%), Postives = 140/165 (84.85%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVN-QKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNK DLT  KVV + TAK +AD++GIPF+ETSAK+ATNVEQAFM MAA IKNRM    A+++++P        PV+  K GCC
Sbjct:   41 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKINSSTPVSANKGGCC 205          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.276e-64
Identity = 127/164 (77.44%), Postives = 134/164 (81.71%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV Q  G C
Sbjct:   38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.843e-64
Identity = 125/164 (76.22%), Postives = 134/164 (81.71%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRT+TSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +G+PF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV   SG C
Sbjct:   38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKSASGGC 200          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.843e-64
Identity = 126/164 (76.83%), Postives = 134/164 (81.71%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +G+PF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV   SG C
Sbjct:   38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPASGGC 200          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.333e-64
Identity = 126/164 (76.83%), Postives = 133/164 (81.10%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV    G C
Sbjct:   38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.333e-64
Identity = 126/164 (76.83%), Postives = 133/164 (81.10%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV    G C
Sbjct:   38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.411e-63
Identity = 126/164 (76.83%), Postives = 133/164 (81.10%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQER RTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV Q  G C
Sbjct:   38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.843e-63
Identity = 125/164 (76.22%), Postives = 133/164 (81.10%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV    G C
Sbjct:   38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.143e-63
Identity = 118/165 (71.52%), Postives = 140/165 (84.85%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+EQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYD T+ ESFNNVKQWL+EIDRYA+E+V KLL+GNK D+  +KVVS ET +A ADE+GIPF+ETSAK + NVEQAF+ +A  IK +M SQ  A+  + P TVQ++GQP+ Q +G C
Sbjct:   38 ISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202          
The following BLAST results are available for this feature:
BLAST of CN185830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_PIG2.747e-6777.44Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_LYMST1.044e-6676.97Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1B_BOVIN1.276e-6477.44Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1B_RAT2.843e-6476.22Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_MOUSE2.843e-6476.83Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_PONAB6.333e-6476.83Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN6.333e-6476.83Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_PIG1.411e-6376.83Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB1B_MACFA1.843e-6376.22Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RABD1_ARATH3.143e-6371.52Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185830 ID=CN185830; Name=CN185830; organism=Citrus sinensis; type=EST; length=803bp
CTTTTTTTTTTGAGAGAGAAAATTTATATATTAGCTACATCGATGACGAA
CAATCTTTAGAATAGAGGACAGCAAGATAGATACCGCTATTCACCAATAT
TCCTAATTTGTACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAAT
GGAAACTTTAGTAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGAC
AATAAACCTTCATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATT
CCACAAAGAACATTGATAAACATCAGAAATTCACCAACACTAATTCCCTT
CTAAGTGGAGCAGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCT
GCACTGTTGGCGGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTA
TTCTTGATTGAAGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGC
ACTTTTAGCACTTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATG
CCTTGGCTGTCTCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTG
TTACCAACTAAAAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTC
ATTCAGCCATTGCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCAT
AAACAACAATGATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTC
CTAAAACGCTCTTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTT
GCCATCTTGTTCCACAGTGCGGATTTTAAAGTCAACTCCAATGGTGCTAA
TGT
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