CN185830

Overview
NameCN185830
Unique NameCN185830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:12..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.560e-62
Identity = 122/164 (74.39%), Postives = 134/164 (81.71%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL+EIDRYA ENVNKLLVGNK DLTA +VVS + AK FA+ +GI F+ETSAK+A NVE+AFM MAA IK RMA+ P +  A       +  P N  S CC
Sbjct:   38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPKAGVKLTPGQQVPSNGGSKCC 201          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.475e-62
Identity = 120/165 (72.73%), Postives = 134/165 (81.21%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM-ASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT+E +GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ +F NV+QWL EIDR+A ENVNKLLVGNK DL A KVV + TAKAFAD + IPF+ETSAK +TNVEQAFM MA  IKNR+ ASQP     +   V     P++ KSGCC
Sbjct:   38 ISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.927e-62
Identity = 119/166 (71.69%), Postives = 131/166 (78.92%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPV--NQKSGCC 801
            ISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGI VVYDVTD +SFNNVKQWL EIDRYA+E VNKLLVGNK D+T  KVV Y  AK FAD +GIPF+ETSAK+A+NVEQAF+ MA  IK RM S  A+NN +       G  V  N   GCC
Sbjct:   38 ISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.942e-61
Identity = 115/171 (67.25%), Postives = 140/171 (81.87%), Query Frame = -3
Query:  304 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP-TVQIRGQPVNQK----SGCCST 801
            ISTIGVDFKIRTVE +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYD+TD ESFNNVKQWL+EIDRYA+++V KLLVGNKCDL  N+ V    A+A+A E+GIPF+ETSAK + NVE+AF+AM+A+IK   A   A+   +P   VQ++G+P+ Q+    S CCST
Sbjct:   38 ISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCST 208          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 8.559e-61
Identity = 120/164 (73.17%), Postives = 131/164 (79.88%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKI+T+E DGKTIKLQIWDTAGQERF TITSSYYRGAHG +VVYDVTDQES+ NVKQWL EIDR+ASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK +M    AS   R P ++I   PV    G C
Sbjct:   38 ISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.366e-58
Identity = 114/165 (69.09%), Postives = 130/165 (78.79%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKSGCC 801
            ISTIGVDFKIRT E +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ+SFNNVKQWL EIDRYA E VN+LLVGNK D+   KVV Y  AK FAD + IPF+ETSAK +TNVEQAF+ M+  IK RM +   AS+NA+      +G  V+Q S  C
Sbjct:   38 ISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNC 202          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 4.114e-55
Identity = 109/169 (64.50%), Postives = 126/169 (74.56%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP----TVQIRGQPV-NQKSGCC 801
            ISTIGVDFKI+TVE DGKT+KLQIWDTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+  V KLLVGNKCDL   +VV Y+ AK FAD   +PF+ETSA  +TNVE AF+ MA  IK  M+ Q  +   +       V ++GQ + N   GCC
Sbjct:   38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGGCC 206          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.018e-55
Identity = 108/162 (66.67%), Postives = 125/162 (77.16%), Query Frame = -3
Query:  316 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSG 801
            ISTIGVDFKI+T+  DGKTIKLQIWDTAGQERFRTITSSYYRGA GII+VYD TDQ+SF NVKQW+ EIDRYA ENVNKLLVGNK DL   KVV    AK+FA+  GIPF+ETSAK+ATNVE+ F++MA  IKNR+A        +P  V I+ +   +  G
Sbjct:   40 ISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD--IQETPKPDEVDIKSKNKTKSGG 199          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.042e-54
Identity = 108/166 (65.06%), Postives = 125/166 (75.30%), Query Frame = -3
Query:  313 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA--RPPTVQIRG-QPVNQKSGC 801
            ISTIGVDFKIRT+  DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD  SFNNVKQW+ EI RYA ++V +LLVGNKCDL   K+V   TA+ +AD +GIPF+ETSAKS+ NVEQAFM MA+ IK        +NN+      V+  G  P+ +K  C
Sbjct:   38 ISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKC 203          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.514e-49
Identity = 94/167 (56.29%), Postives = 126/167 (75.45%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ---IRGQPVNQKSGCC 801
            I+TIG+DFKIRT+E +GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF N++ W+  I+++A+++VNK+L+GNKCD+   KVV     K+ ADE GI F+ETSAK++ NVE+AF+++A  IK RM   P   N +P  VQ     G   N+K  CC
Sbjct:   45 ITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP---NEQPQVVQPGTNLGANNNKKKACC 208          
The following BLAST results are available for this feature:
BLAST of CN185830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_PHYIN1.560e-6274.39Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1A_DICDI3.475e-6272.73Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
YPT1_NEUCR5.927e-6271.69GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
YPTM1_MAIZE2.942e-6167.25GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1C_HUMAN8.559e-6173.17Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
YPT1_SCHPO1.366e-5869.09GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
YPT1_YEAST4.114e-5564.50GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1D_DICDI7.018e-5566.67Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB1B_DICDI2.042e-5465.06Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB8A_DICDI1.514e-4956.29Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185830 ID=CN185830; Name=CN185830; organism=Citrus sinensis; type=EST; length=803bp
CTTTTTTTTTTGAGAGAGAAAATTTATATATTAGCTACATCGATGACGAA
CAATCTTTAGAATAGAGGACAGCAAGATAGATACCGCTATTCACCAATAT
TCCTAATTTGTACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAAT
GGAAACTTTAGTAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGAC
AATAAACCTTCATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATT
CCACAAAGAACATTGATAAACATCAGAAATTCACCAACACTAATTCCCTT
CTAAGTGGAGCAGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCT
GCACTGTTGGCGGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTA
TTCTTGATTGAAGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGC
ACTTTTAGCACTTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATG
CCTTGGCTGTCTCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTG
TTACCAACTAAAAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTC
ATTCAGCCATTGCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCAT
AAACAACAATGATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTC
CTAAAACGCTCTTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTT
GCCATCTTGTTCCACAGTGCGGATTTTAAAGTCAACTCCAATGGTGCTAA
TGT
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