CN185830

Overview
NameCN185830
Unique NameCN185830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:12..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.508e-36
Identity = 77/169 (45.56%), Postives = 106/169 (62.72%), Query Frame = -3
Query:  313 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM------ASQPASNNARPPTVQIRGQPVNQKSGC 801
            +ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VV  E  +  AD++G  F E SAK   NV+Q F  +   I ++M      +S P SN   P    +   P  Q S C
Sbjct:   52 VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.275e-36
Identity = 75/168 (44.64%), Postives = 110/168 (65.48%), Query Frame = -3
Query:  310 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGCC 801
            +ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +V+S E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T      P  Q +  C
Sbjct:   60 VSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC 227          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.275e-36
Identity = 82/173 (47.40%), Postives = 109/173 (63.01%), Query Frame = -3
Query:  307 TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ--PASNN--------ARPPTVQIRGQPVNQKSGCCS 795
            TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+  + VSYE  + FA E G+ FME SAK+A NVE+AF+  A +I  ++       SN         A P      G   +Q  GCCS
Sbjct:   38 TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYAIPGQSGGAGSSSSQGGGCCS 210          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 5.586e-36
Identity = 77/169 (45.56%), Postives = 106/169 (62.72%), Query Frame = -3
Query:  313 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM------ASQPASNNARPPTVQIRGQPVNQKSGC 801
            +ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VVS E  +  A ++G  F E SAK   NV+Q F  +   I ++M      +S P SN   P    +   P  Q S C
Sbjct:   52 VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 5.586e-36
Identity = 74/167 (44.31%), Postives = 112/167 (67.07%), Query Frame = -3
Query:  313 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 801
            +ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +V+S E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   60 VSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.586e-36
Identity = 68/141 (48.23%), Postives = 101/141 (71.63%), Query Frame = -3
Query:  379 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPA 801
            IST+G+DF+ + V+ DG  +KLQIWDTAGQERFR++T +YYR AH ++++YDVT++ SF++++ WL EI  +A ++V  +L+GNK D    + V  E A+  A + G+PFMETSAK+  NV+ AF A+A  +K R    P+
Sbjct:   94 ISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKELKQRHTKAPS 234          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.296e-36
Identity = 74/167 (44.31%), Postives = 111/167 (66.47%), Query Frame = -3
Query:  313 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 801
            +ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+   +VVS E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   60 VSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.296e-36
Identity = 74/167 (44.31%), Postives = 111/167 (66.47%), Query Frame = -3
Query:  313 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 801
            +ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+   +VVS E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   60 VSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.529e-36
Identity = 76/168 (45.24%), Postives = 105/168 (62.50%), Query Frame = -3
Query:  313 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM-----ASQPASNNARPPTVQIRGQPVNQKSGC 801
            +ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VV  E  +  AD++G  F E SAK   NV+Q F  +   I  +M      S  + +N + P V     P  Q S C
Sbjct:   52 VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGKGPAV--GDAPAPQPSSC 217          
BLAST of CN185830 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.529e-36
Identity = 72/134 (53.73%), Postives = 98/134 (73.13%), Query Frame = -3
Query:  394 TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 795
            TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+  + VSYE  + FA E G+ FME SAK+A NVE+AF+  A +I  ++
Sbjct:   38 TIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
The following BLAST results are available for this feature:
BLAST of CN185830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3D_MOUSE2.508e-3645.56Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3C_HUMAN3.275e-3644.64Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB2B_MAIZE3.275e-3647.40Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB3D_RAT5.586e-3645.56GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3C_BOVIN5.586e-3644.31Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB26_BOVIN5.586e-3648.23Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB3C_RAT7.296e-3644.31Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE7.296e-3644.31Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB3D_HUMAN9.529e-3645.24Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB2A_MAIZE9.529e-3653.73Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185830 ID=CN185830; Name=CN185830; organism=Citrus sinensis; type=EST; length=803bp
CTTTTTTTTTTGAGAGAGAAAATTTATATATTAGCTACATCGATGACGAA
CAATCTTTAGAATAGAGGACAGCAAGATAGATACCGCTATTCACCAATAT
TCCTAATTTGTACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAAT
GGAAACTTTAGTAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGAC
AATAAACCTTCATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATT
CCACAAAGAACATTGATAAACATCAGAAATTCACCAACACTAATTCCCTT
CTAAGTGGAGCAGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCT
GCACTGTTGGCGGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTA
TTCTTGATTGAAGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGC
ACTTTTAGCACTTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATG
CCTTGGCTGTCTCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTG
TTACCAACTAAAAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTC
ATTCAGCCATTGCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCAT
AAACAACAATGATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTC
CTAAAACGCTCTTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTT
GCCATCTTGTTCCACAGTGCGGATTTTAAAGTCAACTCCAATGGTGCTAA
TGT
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