DC900050

Overview
NameDC900050
Unique NameDC900050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900050_ssr53 microsatellite DC900050_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5903 contig Csv1_Contig5903:587..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_BOTFB (Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 49/107 (45.79%), Postives = 75/107 (70.09%), Query Frame = 2
Query:   74 KGTYVPPGMR----AGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 382
            K +YVPP +R    AG ER G     R+D  ++RVTN+SE   E +L ++F  FG V+RV++A D++TG+++GF F++F  + DA +A  K++GYG+ +LILRVE+A
Sbjct:  178 KSSYVPPHLRNGGTAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDAAKACEKMDGYGFKHLILRVEFA 284          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_ANOGA (Eukaryotic translation initiation factor 3 subunit G OS=Anopheles gambiae GN=eIF3-S4 PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 49/107 (45.79%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   77 GTYVPPGMRA--GAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP M+   G    G  MR R+D +++R++NLSE   E DL EL + FG  ++++++ D+ TG+ +GF +V+F ++ DA  AI  LNGYGYD+LIL VEW+ P+
Sbjct:  162 GKYVPPHMKESQGKPGIGGAMRGRDDTSAIRISNLSEAMTEADLEELVKKFGPHTKMFLSRDKSTGLCKGFAYVHFRSRRDAATAIEVLNGYGYDHLILSVEWSKPQ 268          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROYA (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila yakuba GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROSI (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila simulans GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROSE (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila sechellia GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROME (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila melanogaster GN=eIF3-S4-1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROER (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila erecta GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_CULQU (Eukaryotic translation initiation factor 3 subunit G OS=Culex quinquefasciatus GN=eIF3-S4 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERT-GTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP MR   +   G + R R+D  ++R++NLSE   E DL EL +  G  S++++A D+ TG+ +GF +V+F ++ DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  164 GKYVPPSMRDSQKAALGANPRGRDDTTAIRISNLSEAMTEADLEELVKKIGPHSKMFLARDKNTGLCKGFAYVHFKSRRDAATAIELLNGHGYDHLILNVEWSKPQ 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_CRYNE (Eukaryotic translation initiation factor 3 subunit G OS=Cryptococcus neoformans GN=TIF35 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 2
Query:   71 TKGTYVPPGMRAGAERTGTDMRRRNDE-NSVRVTNLSEDTREPDLLELFRPF---GAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            T G YVPP  RAGA   G  M R  DE  ++RVT+LS D  E DL  LF+PF   G + R  +  D+ T +S+G  FV+F +K DA+ A+  LNG GYD+LIL V W+ PR
Sbjct:  176 TGGKYVPPSQRAGATGAGDSMFRARDELPTLRVTSLSIDAEEDDLRALFQPFAKNGKLGRANIVRDRNTRVSKGLAFVSFESKRDAEAAMAHLNGRGYDSLILEVAWSQPR 286          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROGR (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila grimshawi GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 47/105 (44.76%), Postives = 73/105 (69.52%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP ++  +++ G  +R R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  164 GKYVPPFLK-DSQKGGMGIRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQ 267          
The following BLAST results are available for this feature:
BLAST of DC900050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EIF3G_BOTFB6.960e-2145.79Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ANOGA6.960e-2145.79Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROYA6.960e-2144.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROSI6.960e-2144.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROSE6.960e-2144.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROME6.960e-2144.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROER6.960e-2144.86Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CULQU1.551e-2045.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CRYNE1.551e-2048.65Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROGR2.025e-2044.76Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900050 VSS Citrus sinensis cDNA clone VS27Q56 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900050 ID=DC900050; Name=DC900050; organism=Citrus sinensis; type=EST; length=611bp
TGCTGCTCCAGCTGAGACATTCATTGATAAACCAGCTGCATCAGAGACTG
CAGCTGCTGCTGCTGGCGCGACCAAGGGAACATATGTTCCTCCTGGCATG
AGAGCAGGGGCGGAGAGAACTGGAACTGATATGAGACGCAGGAATGATGA
GAACTCTGTTAGGGTCACCAACCTATCGGAGGACACTCGGGAACCTGACT
TGCTTGAGCTCTTCCGGCCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCT
GTTGATCAGAAGACTGGCATAAGCAGAGGTTTTGGTTTTGTGAACTTTGT
GAACAAGGAAGATGCTCAGAGAGCTATCAACAAACTGAATGGCTATGGTT
ATGACAATCTCATCCTCAGAGTTGAATGGGCCACTCCAAGGACTAACTAG
ATCGATCTATTTATCCTTGAGCTTTAACGGGATACAATATCAATTTTGTG
TATTATTTTATACTATCTTAAGTATTGAATGATCTTGGAGTGTTTTGTTG
AGAGACTATGGCTTTCCTACAAGTACTTTGTACTCGAGATGATTTAATTT
ATGCCGTAGGTTCAATGTTTTTCAATGTTATTTGATNTCTAATAAGATAC
CAGGCAACACT
back to top