DC900050

Overview
NameDC900050
Unique NameDC900050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900050_ssr53 microsatellite DC900050_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5903 contig Csv1_Contig5903:587..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_NEUCR (Eukaryotic translation initiation factor 3 subunit G OS=Neurospora crassa GN=tif-35 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 48/109 (44.04%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   74 KGTYVPPGMR------AGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 382
            KG+YVPP +R      A  ER G     R+D  ++RVTN+SE   E +L ++F  FG V+RV++A D+ TG+++GF F++F ++ DA +A  K++G+G+ +LILRVE+A
Sbjct:  185 KGSYVPPALRGAGGAAAAGERMGGKYGERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRSDAVKACAKMDGFGFRHLILRVEFA 293          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_MAGGR (Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe grisea GN=TIF35 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 48/114 (42.11%), Postives = 76/114 (66.67%), Query Frame = 2
Query:   74 KGTYVPPGMRAGAER-------TGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            KG+YVPP +R   +         G     R+D  ++RVTN+SE   E +L ++F  FG V+RV++A D+ TG+++GF F++F ++EDA +A NK++G+G+ +LILRVE+A   T
Sbjct:  190 KGSYVPPALRGDRKEGEKMGGGAGGKYGERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKMDGWGFKHLILRVEFAKKAT 303          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_AEDAE (Eukaryotic translation initiation factor 3 subunit G OS=Aedes aegypti GN=eIF3-S4-1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 2
Query:   77 GTYVPPGMRAGAER-TGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP MR   +   G + R R+D  ++R++NLSE   E DL EL +  G  S++++A D+ TG+ +GF +V+F ++ DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  164 GKYVPPSMRDSQKPGMGGNPRGRDDTTAIRISNLSEAMTEADLEELVKKIGPHSKMFLARDKNTGLCKGFAYVHFKSRRDAATAIELLNGHGYDHLILNVEWSKPQ 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROWI (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila willistoni GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP ++ G        R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  162 GKYVPPFLKEGGASGKPWARERDDSSAVRISNLSESMTEVDLEELVKKIGPHTKMYLAREKNTGLCKGFAYVHFKFRQDAAAAIEILNGHGYDHLILCVEWSKPQ 266          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROVI (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila virilis GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 46/105 (43.81%), Postives = 72/105 (68.57%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP ++ GA+      R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ +G+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  159 GKYVPPFLKDGAKG-----RERDDSSAVRISNLSESMTEDDLEELVKKIGPYTKMYLAREKNSGLCKGFAYVHFKYRKDAAEAIEILNGHGYDHLILSVEWSKPQ 258          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_EMENI (Eukaryotic translation initiation factor 3 subunit G OS=Emericella nidulans GN=tif35 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 49/109 (44.95%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            G+YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D++T  ++GF F++F ++ DA RA +K++G+GY +LILRVE+A   T
Sbjct:  181 GSYVPPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAARACDKMDGFGYRHLILRVEFAKRAT 289          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROYA (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila yakuba GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 48/109 (44.04%), Postives = 71/109 (65.14%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP M+ G    G       R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  164 GKYVPPFMKDGGGGPGGKNWGRGRERDDSSAVRISNLSESMTEADLEELVKKIGPHTKMYLAREKNTGLCKGFAYVHFKFRQDAAAAIEVLNGHGYDHLILCVEWSKPQ 272          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROER (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila erecta GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP M+ G   +G       R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  164 GKYVPPFMKDGGGGSGGKNWGRGRDRDDSSAVRISNLSESMTEADLEELVKKIGPHTKMYLAREKNTGLCKGFAYVHFKFRQDAAAAIEVLNGHGYDHLILCVEWSKPQ 272          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPTN (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif35 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 48/105 (45.71%), Postives = 74/105 (70.48%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 382
            G+YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D++T  ++GF F++F ++ DA RA +K++G+GY +LILRVE+A
Sbjct:  178 GSYVPPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDAARACDKMDGFGYRHLILRVEFA 282          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPOR (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus oryzae GN=tif35 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 49/109 (44.95%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            G+YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D++T  ++GF F++F ++ DA RA  K++G+GY +LILRVE+A   T
Sbjct:  179 GSYVPPHLRKGAAGGGERMGGKFEKDDLATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAARACEKMDGFGYRHLILRVEFAKRTT 287          
The following BLAST results are available for this feature:
BLAST of DC900050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EIF3G_NEUCR3.454e-2044.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_MAGGR3.454e-2042.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_AEDAE4.512e-2045.28Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROWI1.714e-1943.81Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROVI1.714e-1943.81Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_EMENI2.924e-1944.95Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROYA3.819e-1944.04Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROER3.819e-1944.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPTN6.515e-1945.71Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPOR6.515e-1944.95Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionDC900050 VSS Citrus sinensis cDNA clone VS27Q56 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900050 ID=DC900050; Name=DC900050; organism=Citrus sinensis; type=EST; length=611bp
TGCTGCTCCAGCTGAGACATTCATTGATAAACCAGCTGCATCAGAGACTG
CAGCTGCTGCTGCTGGCGCGACCAAGGGAACATATGTTCCTCCTGGCATG
AGAGCAGGGGCGGAGAGAACTGGAACTGATATGAGACGCAGGAATGATGA
GAACTCTGTTAGGGTCACCAACCTATCGGAGGACACTCGGGAACCTGACT
TGCTTGAGCTCTTCCGGCCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCT
GTTGATCAGAAGACTGGCATAAGCAGAGGTTTTGGTTTTGTGAACTTTGT
GAACAAGGAAGATGCTCAGAGAGCTATCAACAAACTGAATGGCTATGGTT
ATGACAATCTCATCCTCAGAGTTGAATGGGCCACTCCAAGGACTAACTAG
ATCGATCTATTTATCCTTGAGCTTTAACGGGATACAATATCAATTTTGTG
TATTATTTTATACTATCTTAAGTATTGAATGATCTTGGAGTGTTTTGTTG
AGAGACTATGGCTTTCCTACAAGTACTTTGTACTCGAGATGATTTAATTT
ATGCCGTAGGTTCAATGTTTTTCAATGTTATTTGATNTCTAATAAGATAC
CAGGCAACACT
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