DC900050

Overview
NameDC900050
Unique NameDC900050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900050_ssr53 microsatellite DC900050_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5903 contig Csv1_Contig5903:587..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_CAEEL (Eukaryotic translation initiation factor 3 subunit G OS=Caenorhabditis elegans GN=eif-3.G PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  134 RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 388
            R R+DEN+ RVTNL ++  E +L +LF   G V R+++A D+ TG+ +GF FV F +++DA RAI +LN     +++L+VEW  P
Sbjct:  170 RNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVEWTRP 254          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROPE (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila persimilis GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.962e-15
Identity = 43/110 (39.09%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRR-----NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YV P ++ G    G  +         + ++VR++NLSE   E DL EL +  G  +++Y+A ++ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  166 GKYVSPFLKEGGCAIGGGIGIGAKPWVRERSAVRISNLSESMTEADLEELVKKIGPHTKLYLAREKNTGLCKGFAYVHFKFRQDAAAAIEILNGHGYDHLILCVEWSKPQ 275          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_CAEBR (Probable eukaryotic translation initiation factor 3 subunit G OS=Caenorhabditis briggsae GN=eif-3.G.1 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  134 RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 388
            R R+DEN+ RVTNL ++  E +L ++F   G V R+++A D+ TG+ +GF FV F +++DA RAI +LN     +++L+VEW  P
Sbjct:  175 RNRSDENTCRVTNLPQEMNEDELRDVFGRIGRVIRIFIARDKITGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVEWTRP 259          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_KLULA (Eukaryotic translation initiation factor 3 subunit G OS=Kluyveromyces lactis GN=TIF35 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGT----DMRRRNDENSVRVTNLSEDTREPDLL-ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP +RAGA    +    D R R+D  ++R+T ++E   E  L  EL  PFG + RV+V  + +TG SRG  +V F  +E A +A+  L G G+ N +L  EW+ P+
Sbjct:  155 GRYVPPSLRAGARDPSSNAYQDQRERDDAKTIRLTQVNELADEEVLKRELLFPFGEIPRVFVVKNPETGRSRGVAYVTFQTEEIAAQALKLLEGRGFMNFMLHAEWSKPK 264          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_ASHGO (Eukaryotic translation initiation factor 3 subunit G OS=Ashbya gossypii GN=TIF35 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 42/110 (38.18%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLE-LFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP  RAG     +D+    R R+D  ++++  L+E+  E  + + L  PF  V RV V  +++TG SRG  +V F +++DA+ A+  L+G G+ NLIL+V+W+ P+
Sbjct:  159 GKYVPPSRRAGGRDPSSDVYKDQRERDDAMTLKIMQLNENADEMTIKQKLLSPFPNVPRVAVVRNKETGRSRGIAYVTFASEKDAETALRLLHGRGFMNLILQVDWSKPK 268          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_PICST (Eukaryotic translation initiation factor 3 subunit G OS=Pichia stipitis GN=TIF35 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLL--ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 382
            G YVP  +RA A         R+D  +++V+ L+    E D+L  ELF  FG + RV +  +++TG SRGF +V+F+ ++ AQRA++ LNG GY +LIL +EW+
Sbjct:  163 GKYVPRHLRADANGNLPSKEGRDDSTTLKVSQLNSFVDE-DMLRNELFARFGPLQRVTLVRNRETGDSRGFAYVSFITEDMAQRALDALNGKGYHSLILHLEWS 265          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_CANAL (Eukaryotic translation initiation factor 3 subunit G OS=Candida albicans GN=TIF35 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLL--ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 382
            G YVP  +RA A         R+D  +++V+ L+    E D+L  ELF  FG + RV +  +++TG SRGF +V+F  +E AQRA++  NG GY +LIL +EW+
Sbjct:  172 GKYVPRHLRADANGNVPTREARDDSTTLKVSQLNSFVDE-DMLRNELFAKFGPLQRVTIVRNRETGESRGFAYVSFATEEIAQRALDTFNGKGYHSLILHLEWS 274          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_PICGU (Eukaryotic translation initiation factor 3 subunit G OS=Pichia guilliermondii GN=TIF35 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM--RRRNDENSVRVTNLS----EDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP +R GA     DM  R R+D  +++++ L+    ED    +LL+ F P   + RV +  +++TG SRGF +V+FV +  A+ A+N LNG GY +LIL +EW   R
Sbjct:  165 GKYVPPSLRKGAGAV-RDMSGRDRDDSTTLKISQLNTFVDEDMLRNELLKRFHP---LQRVTIVRNRETGESRGFAYVSFVTERQAEEALNTLNGKGYHSLILHLEWPKKR 271          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_LODEL (Eukaryotic translation initiation factor 3 subunit G OS=Lodderomyces elongisporus GN=TIF35 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLL--ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 382
            G Y+P  +R  A         R+D  +++V+ L+    E D+L  ELF  FG + RV V  D++TG SRGF +V+F  +E AQ+A++ LNG GY +LIL +EW+
Sbjct:  171 GRYIPRHLRPDANGNIPTREARDDSTTLKVSQLNTFVDE-DMLRNELFARFGPLQRVTVVRDRETGESRGFAYVSFATEEIAQKALDLLNGKGYHSLILHLEWS 273          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_DEBHA (Eukaryotic translation initiation factor 3 subunit G OS=Debaryomyces hansenii GN=TIF35 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 2
Query:   77 GTYVPPGMR--AGAERTGTDMRRRNDENSVRVTNLSEDTREPDLL--ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVP  +R  A       D++ R+D  +++++ L+    E D+L  EL   +G   R  V  +++TG SRGF +V F  +  A+ A+N LNG GY +LIL +EW+  R
Sbjct:  168 GKYVPRHLRKDANGNMPAKDLKDRDDSTTLKISQLNSIVDE-DMLRNELLGRYGPFQRAIVVRNRETGESRGFAYVTFATESKAEEALNDLNGKGYHSLILHLEWSKKR 275          
The following BLAST results are available for this feature:
BLAST of DC900050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EIF3G_CAEEL1.150e-1544.71Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROPE1.962e-1539.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CAEBR4.370e-1543.53Probable eukaryotic translation initiation factor ... [more]
EIF3G_KLULA5.707e-1540.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASHGO1.271e-1438.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_PICST3.699e-1441.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CANAL3.699e-1441.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_PICGU6.310e-1440.54Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_LODEL8.241e-1441.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_DEBHA4.522e-1236.70Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionDC900050 VSS Citrus sinensis cDNA clone VS27Q56 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900050 ID=DC900050; Name=DC900050; organism=Citrus sinensis; type=EST; length=611bp
TGCTGCTCCAGCTGAGACATTCATTGATAAACCAGCTGCATCAGAGACTG
CAGCTGCTGCTGCTGGCGCGACCAAGGGAACATATGTTCCTCCTGGCATG
AGAGCAGGGGCGGAGAGAACTGGAACTGATATGAGACGCAGGAATGATGA
GAACTCTGTTAGGGTCACCAACCTATCGGAGGACACTCGGGAACCTGACT
TGCTTGAGCTCTTCCGGCCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCT
GTTGATCAGAAGACTGGCATAAGCAGAGGTTTTGGTTTTGTGAACTTTGT
GAACAAGGAAGATGCTCAGAGAGCTATCAACAAACTGAATGGCTATGGTT
ATGACAATCTCATCCTCAGAGTTGAATGGGCCACTCCAAGGACTAACTAG
ATCGATCTATTTATCCTTGAGCTTTAACGGGATACAATATCAATTTTGTG
TATTATTTTATACTATCTTAAGTATTGAATGATCTTGGAGTGTTTTGTTG
AGAGACTATGGCTTTCCTACAAGTACTTTGTACTCGAGATGATTTAATTT
ATGCCGTAGGTTCAATGTTTTTCAATGTTATTTGATNTCTAATAAGATAC
CAGGCAACACT
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