CN185828 | Citrus Genome Database

Overview


Name	CN185828
Unique Name	CN185828
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	272

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2507	contig	Csv1_Contig2507:1..271.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

[Close]

BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2

Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35

The following BLAST results are available for this feature:

BLAST of CN185828 vs. ExPASy Swiss-Prot

BLAST of CN185828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
YPTC1_CHLRE	3.370e-11	88.57	GTP-binding protein YPTC1 OS=Chlamydomonas reinhar...	[more]
YPT1_SCHPO	3.370e-11	88.57	GTP-binding protein ypt1 OS=Schizosaccharomyces po...	[more]
YPT1_PHYIN	3.370e-11	88.57	Ras-like GTP-binding protein YPT1 OS=Phytophthora ...	[more]
YPT1_NEUCR	3.370e-11	88.57	GTP-binding protein ypt1 OS=Neurospora crassa GN=y...	[more]
RAB1_DISOM	3.370e-11	88.57	Ras-related protein ORAB-1 OS=Discopyge ommata PE=...	[more]
RAB1B_RAT	3.370e-11	88.57	Ras-related protein Rab-1B OS=Rattus norvegicus GN...	[more]
RAB1B_PONAB	3.370e-11	88.57	Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1...	[more]
RAB1B_PIG	3.370e-11	88.57	Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ...	[more]
RAB1B_MOUSE	3.370e-11	88.57	Ras-related protein Rab-1B OS=Mus musculus GN=Rab1...	[more]
RAB1B_MACFA	3.370e-11	88.57	Ras-related protein Rab-1B OS=Macaca fascicularis ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0001O21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O21, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185828 ID=CN185828; Name=CN185828; organism=Citrus sinensis; type=EST; length=272bp
ATGGTCAATTTCCCCAGTTTCTCTCCTCTTTTTAAAATCCCCATCCATCT
CTCCCTACGTCGAAGCAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAA
ATTAAAATTTCTCATCATCCTCGTCGAAGTTTCTGTGATTCATTCGATCC
AACGCACGGCACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTT
TGCTCATAGGCGATTCTGGTGTTGGCCAATCGTGTCTACTTTTGAGGTTT
GCTGATGATTCTTATCTGGAAA