CN185828

Overview
NameCN185828
Unique NameCN185828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2507 contig Csv1_Contig2507:1..271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35
[Close]
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35
[Close]
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35
[Close]
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.507e-11
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 2 
Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            M+NEYDYLFKLLLIGDS VG+SCLLLRFADD+Y++
Sbjct:    1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDAYID 35
The following BLAST results are available for this feature:
BLAST of CN185828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RAB1B_HUMAN3.370e-1188.57Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_DICDI3.370e-1188.57Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1B_BOVIN3.370e-1188.57Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RABD1_ARATH7.507e-1182.86Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185828 ID=CN185828; Name=CN185828; organism=Citrus sinensis; type=EST; length=272bp
ATGGTCAATTTCCCCAGTTTCTCTCCTCTTTTTAAAATCCCCATCCATCT
CTCCCTACGTCGAAGCAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAA
ATTAAAATTTCTCATCATCCTCGTCGAAGTTTCTGTGATTCATTCGATCC
AACGCACGGCACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTT
TGCTCATAGGCGATTCTGGTGTTGGCCAATCGTGTCTACTTTTGAGGTTT
GCTGATGATTCTTATCTGGAAA
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