CN185818

Overview
NameCN185818
Unique NameCN185818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185818 vs. ExPASy Swiss-Prot
Match: SERC1_HUMAN (Serine incorporator 1 OS=Homo sapiens GN=SERINC1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = -3 
Query:  175 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 393
            VTYSY+FFH +  LAS+Y  M LT W     E  + +   W +VWV+I + W    LY+W+LVAP++  +R+F
Sbjct:  382 VTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF 452
[Close]
BLAST of CN185818 vs. ExPASy Swiss-Prot
Match: SERC1_BOVIN (Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = -3 
Query:  175 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 393
            VTYSY+FFH +  LAS+Y  M LT W     E  + +   W +VWV+I + W    LY+W+LVAP++  +R+F
Sbjct:  382 VTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF 452
[Close]
BLAST of CN185818 vs. ExPASy Swiss-Prot
Match: SERC3_PONAB (Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = -3 
Query:  175 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 393
            V YSY+ FH++  LAS+Y  M LT W +   +   +    WP+VWV+I + W    LY+W+LVAP++   R+F
Sbjct:  401 VQYSYSLFHLMLCLASLYIMMTLTSWYSPDAKFQSMTSK-WPAVWVKISSSWVCLLLYVWTLVAPLVLTSRDF 472
[Close]
BLAST of CN185818 vs. ExPASy Swiss-Prot
Match: SERC3_HUMAN (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = -3 
Query:  175 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 393
            V YSY+ FH++  LAS+Y  M LT W +   +   +    WP+VWV+I + W    LY+W+LVAP++   R+F
Sbjct:  401 VQYSYSLFHLMLCLASLYIMMTLTSWYSPDAKFQSMTSK-WPAVWVKISSSWVCLLLYVWTLVAPLVLTSRDF 472
The following BLAST results are available for this feature:
BLAST of CN185818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SERC1_HUMAN1.171e-1143.84Serine incorporator 1 OS=Homo sapiens GN=SERINC1 P... [more]
SERC1_BOVIN1.171e-1143.84Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=... [more]
SERC3_PONAB1.997e-1141.10Serine incorporator 3 OS=Pongo abelii GN=SERINC3 P... [more]
SERC3_HUMAN1.997e-1141.10Serine incorporator 3 OS=Homo sapiens GN=SERINC3 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185818 ID=CN185818; Name=CN185818; organism=Citrus sinensis; type=EST; length=773bp
TTTTTTTTTTTTTTTTTACTTTGAAAGCAATTCAATTCATACCCCTTTTG
ATAGACAACATTTTTACAATTTTATGATAAGCAAGCATTCCAAACAGTAT
ACGCTTAACCGTTAGGGAGCTGCATCACACATGCACAATATATATAGGGG
TATTTAAAACATTTTTGGAACTCAGAACTCCCTGTCCGGGAACAGAATTG
GAGCAACCAGTGACCACATGTAGAGAGCTGCAGTTGCCCACCCAGTCAGA
ATCCTAACCCAGACAGATGGCCAACCCACGTCAACTAGCTTCCCACTCTC
CCCGACAGAGGTTGACCACCCAGTTAGAAGCATTGCAGAATACATGCTGG
CGAGAGAGAAAATAATGTGGAAGAAAGCATATGAATATGTGACTGGCTTG
GCCTTTTCCTTTTCTTCTACCTCATCAGCCTTGTCCATTGGAAGCAGAGG
CTTCCCGCCACCTGCACGAGGTGAACTTGGTGGTGAAAGCAGAGTTGTAG
AAGATCCAGCACGCACTGCAGAATATACTACTGATAGGACAGTGGTAATC
AGGCCCAAGGTAAGGCTGCCAGTAGAGACAGCTTTAGAATGCCTGTGGAG
ACCATTGCATTCGTAATCTCTTGGTTCACTTGAAAGTCCACTGTAGCAGA
GGTACATGCAGTAGAGAGATATTACTGAAGCAGGCAAAATGCTGCCACCC
ACAGCGGGATGTAGAGCAACTACAGCAAAGATAAATGCAAGAATCAAGGT
CATAACAATGAAGAATGTATTGA
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