DC900045

Overview
NameDC900045
Unique NameDC900045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10928 contig Csv1_Contig10928:129..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: GEM1_EMENI (Mitochondrial Rho GTPase 1 OS=Emericella nidulans GN=gem1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.079e-25
Identity = 68/190 (35.79%), Postives = 101/190 (53.16%), Query Frame = 2
Query:    8 KLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDP------AAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 553
            ++ P  S EL+ E   F   +F L D DNDG +  AEL  LF   P  P  W +  +         G++TL+G++++W++ T   P+ +L  L Y+G+           AAL+VTR R   ++  +  RNV    + G   +GKSALL++FL R FS  Y PT   + AVN V+ PGG +  LI+ E+ E
Sbjct:  295 EVPPFASAELSPEGYRFFVNLFLLSDKDNDGGLNDAELASLFAPTPGLPPSWADGSFPSCTVRNEAGHVTLQGWLAQWSMTTFTSPKTTLEYLAYLGFESSDRSNPSTTAALKVTRPRKRRKRPGRVGRNVVLGHIVGAPGSGKSALLDAFLSRGFSTTYHPTIQPRTAVNTVELPGGKQCYLIMDELGE 484          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO2_HUMAN (Mitochondrial Rho GTPase 2 OS=Homo sapiens GN=RHOT2 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.101e-25
Identity = 69/186 (37.10%), Postives = 100/186 (53.76%), Query Frame = 2
Query:   17 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG----DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 562
            P  S EL     +F++ +F  +D D DGA+ P EL+ LF   P +PW   P       T  G L L G++ +W L+T LD R  L +L Y+GY      D A A+ VTR++ +D++K QT+R+V  C + G +  GKSA L +FL R             YA++ V Q  G +K LIL E+  +G+
Sbjct:  295 PGCSTELNHLGYQFVQRVFEKHDQDRDGALSPVELQSLFSVFPAAPW--GPELPRTVRTEAGRLPLHGYLCQWTLVTYLDVRSCLGHLGYLGYPTLCEQDQAHAITVTREKRLDQEKGQTQRSVLLCKVVGARGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTV-QVNGQEKYLILCEVGTDGL 477          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: GEM1_CANAL (Mitochondrial Rho GTPase 1 OS=Candida albicans GN=GEM1 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.101e-25
Identity = 67/190 (35.26%), Postives = 106/190 (55.79%), Query Frame = 2
Query:   11 LSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-GDPAAALRVTRKRSVDRKKQQT------ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 553
            ++P  SVEL+    +F   +F  +D DNDG +   EL  LF + P  P  W E+ +  +      G +TL+G++++W L T L  + +L  L Y+G+  G+   AL+VT+ R + +K  +T      +RNVF C + G   AGKS+LL SFL   +S+ Y+PT   +  V  ++  GG +  LIL+E+ E
Sbjct:  305 VNPHSSVELSPTGYKFFVDLFIKFDKDNDGGLNEDELNTLFRSTPGIPKLWVESNFPSSIVCNEEGYVTLQGWLAQWNLTTFLSYKTTLEYLAYLGFDEGNSTKALKVTKPRKIRQKNGKTYRNAVNDRNVFNCFIVGAPKAGKSSLLESFLHGSYSDIYSPTIQPRLVVKDIELRGGKQCYLILEELGE 494          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO_DROME (Mitochondrial Rho GTPase OS=Drosophila melanogaster GN=Miro PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.995e-25
Identity = 67/193 (34.72%), Postives = 105/193 (54.40%), Query Frame = 2
Query:    2 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAP--YKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGY----GGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVD-----QPGGNKKTLILQEI 547
            P K+ P  S EL+    +FL  +F  YD D DGA+ P E + LF T P +PW  +    K        G +TL G++ +W LMTL+D   ++  L Y+G+         AA+ VTR+R +D  K+Q+ R+V++C + GP+ +GK+ +   FL     E+     G+++  NVV+     Q  G +K LIL++I
Sbjct:  316 PLKIPPGSSTELSHRGQQFLIAVFERYDRDGDGALSPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLMTLIDVVKTMEYLAYLGFNVHENDSQLAAIHVTRERRIDLAKRQSSRSVYKCHVIGPKGSGKTGMCRGFL----VEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDI 504          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO1_BOVIN (Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.995e-25
Identity = 71/189 (37.57%), Postives = 102/189 (53.97%), Query Frame = 2
Query:    8 KLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 553
            K+ PD + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GKS +L + L R  +  +         YA+N V    G +K L+L +I E
Sbjct:  305 KIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNEKGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNCGKSGVLQALLGRNLTRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISE 491          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO1_HUMAN (Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.193e-24
Identity = 71/189 (37.57%), Postives = 101/189 (53.44%), Query Frame = 2
Query:    8 KLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 553
            K+ PD + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GKS +L + L R     +         YA+N V    G +K L+L +I E
Sbjct:  292 KIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTV-YVYGQEKYLLLHDISE 478          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO2_XENTR (Mitochondrial Rho GTPase 2 OS=Xenopus tropicalis GN=rhot2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.658e-24
Identity = 70/189 (37.04%), Postives = 101/189 (53.44%), Query Frame = 2
Query:    2 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN-LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ-YAVNVVDQPGGNKKTLILQEI 547
            P ++  + S EL     +FL+  F  +D+D DGA+ P+EL+  F   P +PW   P   +   TA G  L L G++ +W L+  LD    L +L Y+GY           A+ VTR++S+D +K QT+RNVF C + GP+  GKSA L +FL +   E          Y+VN V   GG +K LIL E+
Sbjct:  290 PLRIPHESSTELNHFGYQFLQKAFEKHDLDEDGALSPSELQSFFSVFPYTPW--GPELASTVCTAQGGYLPLHGYLCQWTLVAYLDVHRCLEHLGYLGYPILCEQESQTHAITVTREKSIDLEKGQTQRNVFLCRVIGPRGTGKSAFLRAFLGQSLEEQQQSNKPPSFYSVNTV-LVGGQEKYLILFEV 475          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO1_MOUSE (Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.534e-24
Identity = 70/189 (37.04%), Postives = 100/189 (52.91%), Query Frame = 2
Query:    8 KLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 553
            K+ PD + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +  GK+ +L S L R     +         YA+N V    G +K L+L +I E
Sbjct:  305 KIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFQVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGVKGCGKTGVLQSLLGRNLMRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISE 491          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO1_CHICK (Mitochondrial Rho GTPase 1 OS=Gallus gallus GN=RHOT1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.534e-24
Identity = 68/189 (35.98%), Postives = 98/189 (51.85%), Query Frame = 2
Query:    8 KLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 553
            K+ PD + EL   A  FL+ IF  +D+D D A+ P EL+DLF   P  PW              G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +  GKS +L + L R               YA+N V    G +K L+L ++ +
Sbjct:  292 KIPPDCTTELNHHAYLFLQSIFDKHDLDRDCALSPDELKDLFKVFPYMPWGPDVNNTVCTNGKGGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILAEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVVGMKGCGKSGVLQALLGRNLMRQRQIRAEHKSYYAINTV-YVYGQEKYLLLHDVSD 479          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO_DROPS (Mitochondrial Rho GTPase OS=Drosophila pseudoobscura pseudoobscura GN=Miro PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.319e-23
Identity = 66/192 (34.38%), Postives = 101/192 (52.60%), Query Frame = 2
Query:    2 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD-EAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGY----GGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVD-----QPGGNKKTLILQEI 547
            P K+ P  S EL+    +FL  +F  YD D DGA+ P E + LF   P SPW      + +      G +TL G++ +W LMTL+D   ++  L Y+G+         AA+ VTR+R +D  K+Q+ R+V++C + GP  +GK+ L   FL     +      G+++  NVV      Q  G +K LIL++I
Sbjct:  314 PLKIPPGSSTELSHRGQKFLISVFERYDRDCDGALSPEEHKMLFSVCPSSPWSYSTDIRKSCPINDKGWVTLHGWLCRWTLMTLIDVVKTMEYLAYLGFNVHENDSLLAAIHVTRERRIDLAKRQSSRSVYKCHVIGPNGSGKTGLCRGFL----VDEMQKLIGKEFKTNVVHCINSVQVYGQEKHLILRDI 501          
The following BLAST results are available for this feature:
BLAST of DC900045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GEM1_EMENI1.079e-2535.79Mitochondrial Rho GTPase 1 OS=Emericella nidulans ... [more]
MIRO2_HUMAN4.101e-2537.10Mitochondrial Rho GTPase 2 OS=Homo sapiens GN=RHOT... [more]
GEM1_CANAL4.101e-2535.26Mitochondrial Rho GTPase 1 OS=Candida albicans GN=... [more]
MIRO_DROME6.995e-2534.72Mitochondrial Rho GTPase OS=Drosophila melanogaste... [more]
MIRO1_BOVIN6.995e-2537.57Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 ... [more]
MIRO1_HUMAN1.193e-2437.57Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT... [more]
MIRO2_XENTR2.658e-2437.04Mitochondrial Rho GTPase 2 OS=Xenopus tropicalis G... [more]
MIRO1_MOUSE4.534e-2437.04Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot... [more]
MIRO1_CHICK4.534e-2435.98Mitochondrial Rho GTPase 1 OS=Gallus gallus GN=RHO... [more]
MIRO_DROPS1.319e-2334.38Mitochondrial Rho GTPase OS=Drosophila pseudoobscu... [more]

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Properties
Property NameValue
Genbank descriptionDC900045 VSS Citrus sinensis cDNA clone VS27Q52 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900045 ID=DC900045; Name=DC900045; organism=Citrus sinensis; type=EST; length=579bp
TCCAACTAAGCTCTCTCCTGATCAGAGTGTGGAACTGGCAAGTGAAGCTG
TGGAATTCCTACGTGGTATCTTCGGATTGTATGACATTGATAATGATGGA
GCAGTGAGGCCTGCGGAGCTTGAGGATCTATTTTTAACTGCACCAGAAAG
TCCGTGGGATGAAGCTCCATACAAGGATGCTGCAGAGACAACAGCACTGG
GCAATTTAACACTCAAAGGTTTCGTGTCTAAGTGGGCTCTAATGACTCTG
CTTGACCCGCGACACAGTTTGGCAAATTTGATATACGTTGGATACGGTGG
TGATCCTGCTGCAGCACTCCGTGTTACTAGGAAAAGATCAGTAGATCGTA
AGAAGCAACAAACTGAAAGAAATGTTTTCCGTTGTCTCCTTTTTGGTCCA
CAAAATGCTGGAAAGTCTGCACTGTTGAATTCATTCTTGGAAAGGCCATT
CTCAGAAAATTATGCCCCAACAACCGGTGAGCAATATGCGGTGAATGTGG
TTGACCAGCCTGGGGGAAATAAGAAGACTCTTATTCTGCAAGAAATACCA
GAAGAAGGAGTGAAAAAATCCTGTCCACC
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