DC900045

Overview
NameDC900045
Unique NameDC900045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10928 contig Csv1_Contig10928:129..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO2_RAT (Mitochondrial Rho GTPase 2 OS=Rattus norvegicus GN=Rhot2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.319e-23
Identity = 68/190 (35.79%), Postives = 102/190 (53.68%), Query Frame = 2
Query:    2 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEI 547
            P  + P  S EL     +F++ +F  +D D+DG + P ELE LF     +PW   P       T  G L+L+G++ +W L+T LD +H LA+L Y+GY         A A+ VTR++ +D++K QT+R+V  C + G +  GKSA L +FL     E     AP     + +N V +  G +K LIL E+
Sbjct:  290 PLYVPPGCSTELNHRGYQFVQRVFEKHDQDHDGVLSPTELESLFSVFSVAPW--GPELLHTVPTEAGCLSLRGYLCQWTLVTYLDVQHCLAHLGYLGYPTLCEQDSQAQAITVTREKRLDQEKGQTQRSVLMCKVLGARGVGKSAFLQAFLGHSLGEARDRDAPEKLPTHTINTV-RVSGQEKYLILCEV 476          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: GEM1_USTMA (Mitochondrial Rho GTPase 1 OS=Ustilago maydis GN=GEM1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.939e-23
Identity = 69/216 (31.94%), Postives = 111/216 (51.39%), Query Frame = 2
Query:   17 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES--PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAA-------------------------------------ALRVTRKRSVDRKKQ-QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 544
            P+ SVEL+    +FL  IF ++D D DGA+   EL+ LF+TAP++  PW    +  +  T   G +TL+G++++W++ TLLD R +LA L Y+GY   P +                                     AL++TR R  D+KK+   +R+VF   + G   +GK+A+L + + + F+  Y PT      V+ V+Q G  ++ L+LQE
Sbjct:  324 PECSVELSPNGYQFLTDIFEVHDKDRDGALSEEELDSLFITAPDNRHPWQGTGFPTSTITDEHGAVTLQGWLAQWSMTTLLDHRTTLAYLAYLGYPSFPLSGSSGSASTPAPIPLTPTGPPGSRPSRNRTPCPPSTITALKLTRPRKTDKKKKGAIQRSVFLGFVLGAAGSGKTAILRNMVGKRFANAYEPTQKMMSVVSTVEQAGA-ERYLVLQE 538          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: GEM1_KLULA (Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis GN=GEM1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.939e-23
Identity = 67/185 (36.22%), Postives = 97/185 (52.43%), Query Frame = 2
Query:   26 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKK------QQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 556
            SVEL+     F    F  YD DNDG +   EL  LF T P  P  W E  +           +TL+G+++ W++ T +D   +   LIY+G+  D   AL++T+ R   R+          +R V  C + G  N+GKS+LL SFL R FSE Y+PT   + +VN ++  GG +  LILQE+ E+
Sbjct:  322 SVELSPLGYRFFVDTFLKYDKDNDGGLNNDELHLLFKTTPGLPHLWIETNFPFLTVVNNSACITLQGWLALWSMTTFIDYSVTTEYLIYLGFDKDAKNALQITKPRRKRRRNGVYYRAPVFDRKVLNCYMLGKGNSGKSSLLESFLGRSFSEAYSPTIRPKISVNSLELKGGKQYYLILQELGEQ 506          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO1_DANRE (Mitochondrial Rho GTPase 1-A OS=Danio rerio GN=rhot1a PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.838e-23
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 2
Query:    8 KLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 553
            K+ PD + EL   A  FL+ +F  +D D D A+ P EL+DLF   P  PW      +   T   G +T +G++S+W L T LD +  L  L Y+GY         AAA+ VTR + +D +K+QT+R+VFRC + G +  GKS  L +FL R     +         YA++     G  K  L+ + +P+
Sbjct:  292 KIPPDCTTELNHNAYLFLQSVFDKHDKDRDCALSPDELKDLFKVFPYMPWGP-DVNNTVCTNEQGWITYQGYLSQWTLTTYLDVQRCLEYLGYLGYSIIQEQESQAAAITVTRNKRIDLQKKQTQRSVFRCNVLGARGCGKSGFLQAFLGRNLVRQKRIREDHKSYYAISTTYVYGQEKYLLLHEVLPD 479          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO2_MOUSE (Mitochondrial Rho GTPase 2 OS=Mus musculus GN=Rhot2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.235e-21
Identity = 64/184 (34.78%), Postives = 100/184 (54.35%), Query Frame = 2
Query:   17 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVD--QPGGNKKTLILQEI 547
            P  S EL     +F++ +F  +D D+DG + P EL++LF     +PW   P       T  G L L G++ +W LMT LD +  LA+L Y+GY         A A+ VTR++ +D++K QT+R+V  C + G +  GKSA L +FL     E   P   E++ ++ ++  +  G +K LIL E+
Sbjct:  295 PGCSTELNHRGYQFVQRMFEKHDQDHDGVLSPTELQNLFSVFSGAPW--GPELLHTVPTQAGCLPLHGYLCQWTLMTYLDVQQCLAHLGYLGYPTLCEQDSQAQAITVTREKKLDQEKGQTQRSVLMCKVLGARGVGKSAFLQAFLGNSLGEARDPP--EKFPLHTINTVRVNGQEKYLILCEV 474          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: GEM1_YARLI (Mitochondrial Rho GTPase 1 OS=Yarrowia lipolytica GN=GEM1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.593e-21
Identity = 64/211 (30.33%), Postives = 109/211 (51.66%), Query Frame = 2
Query:   20 DQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGD------------------PAAALRVTRKRSVDRKKQQT-----------ERNVFRCLLFGPQNAGKSALLNSFLERP-FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 556
            + SVEL+ E   FL  +F L+D DNDG +  +EL+ LF   P  P  W +  +         G++TL+G+++ W++ T LD + ++A L Y+G+ GD                   AAA R+T  +    KK+++           +R+VF C + G   +GK++LL +FL RP  ++ Y PT      VN V+  GG +  ++++E+ ++
Sbjct:  305 NSSVELSPEGYRFLVDLFLLFDKDNDGGLNDSELKTLFKPTPGIPQKWLDFNFPYTTVHDEQGSITLQGWLALWSMTTFLDYKTTMAYLAYLGFEGDNSKKRFSGSSVTVAMTTAAAAAARLTAFKVTKPKKRRSRPRPYYRATPNDRSVFNCFVLGSHMSGKTSLLEAFLNRPLMTDIYKPTIRPVSVVNSVEMTGGKQCYMVMEELGQQ 515          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: GEM1_SCHPO (Mitochondrial Rho GTPase 1 OS=Schizosaccharomyces pombe GN=gem1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 66/189 (34.92%), Postives = 105/189 (55.56%), Query Frame = 2
Query:    8 KLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG----GDPAAALRVTRKR-SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 553
            +++P Q VEL+ +   FL  +F  +D DNDGA+   EL  LF   P  P  W  + + ++      G +T  G++++W+++TL D + +LA L Y+G+     G    AL+V RKR S +RK  + +RNVF C + G ++ GK+ALL+SF+    +    P T     VN V+     ++ L+L EI E
Sbjct:  292 EVAPGQIVELSPKGYRFLVDLFYQFDRDNDGALNNEELSALFRHTPGLPEIWVSSQFPNSTVLNEHGYVTYNGWLAQWSMITLFDYKTTLAYLAYLGFDTDGRGHNTDALKVMRKRVSQNRKVSKYDRNVFLCFVVGSKSCGKTALLSSFINNN-TNRLTPNT----VVNSVEFQ-STQRYLVLSEIGE 474          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO2_DANRE (Mitochondrial Rho GTPase 2 OS=Danio rerio GN=rhot2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.509e-19
Identity = 62/189 (32.80%), Postives = 96/189 (50.79%), Query Frame = 2
Query:    8 KLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 556
            ++S   + EL     +FL  +F  YD D D A+ PAEL++LF   P  PW    Y +   T     ++  G++ +W L+  LD    L +L Y+GY          +A+ VTR++++D   +QT+R VF C + GP+  GK+  L +FL+R     +  P     YA+N V       K LIL+E+  E
Sbjct:  292 RVSVGCTTELNHLGHQFLLKLFEKYDEDKDSALSPAELKNLFSVLPYMPWSSTVYSNIPLTDDC-YISQHGYLCQWMLLAYLDVHRCLEHLGYLGYPILMEQECQTSAITVTREKALDLDNRQTQRTVFLCKVIGPRGTGKTDFLRAFLQRSTERSDRDPGAPSIYAINTV-SIANQDKYLILEEVDVE 478          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO_CAEBR (Mitochondrial Rho GTPase OS=Caenorhabditis briggsae GN=CBG01740 PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.082e-17
Identity = 59/187 (31.55%), Postives = 99/187 (52.94%), Query Frame = 2
Query:   26 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF--LTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGY---------GGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVD--QPGGNKKTLILQEI 547
            S EL+ E V+F+  +F  YD D DG + P+EL++LF   +AP    D      A ET   G LT  G+++ W + TL++   +   L Y+G+          G+   ++RVTR+R  D +   T+R VF+CL+ G ++AGK+  + S   R  S+      G +++  V++  +     K L+L+E+
Sbjct:  314 STELSPEGVQFVSALFEKYDEDKDGCLSPSELQNLFSVCSAPVITKDNIL---ALETNQRGWLTYNGYMAYWNMTTLINLTQTFEQLAYLGFPVGRSGPGRAGNTLDSIRVTRERKKDLENHGTDRKVFQCLVVGAKDAGKTVFMQSLAGRGMSD--VAQIGRRHSPFVINRVKVKEESKYLLLREV 495          
BLAST of DC900045 vs. ExPASy Swiss-Prot
Match: MIRO_CAEEL (Mitochondrial Rho GTPase OS=Caenorhabditis elegans GN=K08F11.5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 57/185 (30.81%), Postives = 97/185 (52.43%), Query Frame = 2
Query:   26 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGY---------GGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVD--QPGGNKKTLILQEI 547
            S EL+ E V+F+  +F  YD D DG + P+EL++LF   P  P        A ET   G LT  G+++ W + TL++   +   L Y+G+          G+   ++RVTR+R  D +   T+R VF+CL+ G ++AGK+  + S   R  ++      G +++  V++  +     K L+L+E+
Sbjct:  302 STELSPEGVQFVSALFEKYDEDKDGCLSPSELQNLFSVCPV-PVITKDNILALETNQRGWLTYNGYMAYWNMTTLINLTQTFEQLAYLGFPVGRSGPGRAGNTLDSIRVTRERKKDLENHGTDRKVFQCLVVGAKDAGKTVFMQSLAGRGMAD--VAQIGRRHSPFVINRVRVKEESKYLLLREV 483          
The following BLAST results are available for this feature:
BLAST of DC900045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
MIRO2_RAT1.319e-2335.79Mitochondrial Rho GTPase 2 OS=Rattus norvegicus GN... [more]
GEM1_USTMA2.939e-2331.94Mitochondrial Rho GTPase 1 OS=Ustilago maydis GN=G... [more]
GEM1_KLULA2.939e-2336.22Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis... [more]
MIRO1_DANRE3.838e-2334.92Mitochondrial Rho GTPase 1-A OS=Danio rerio GN=rho... [more]
MIRO2_MOUSE1.235e-2134.78Mitochondrial Rho GTPase 2 OS=Mus musculus GN=Rhot... [more]
GEM1_YARLI3.593e-2130.33Mitochondrial Rho GTPase 1 OS=Yarrowia lipolytica ... [more]
GEM1_SCHPO2.329e-2034.92Mitochondrial Rho GTPase 1 OS=Schizosaccharomyces ... [more]
MIRO2_DANRE1.509e-1932.80Mitochondrial Rho GTPase 2 OS=Danio rerio GN=rhot2... [more]
MIRO_CAEBR1.082e-1731.55Mitochondrial Rho GTPase OS=Caenorhabditis briggsa... [more]
MIRO_CAEEL1.413e-1730.81Mitochondrial Rho GTPase OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionDC900045 VSS Citrus sinensis cDNA clone VS27Q52 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900045 ID=DC900045; Name=DC900045; organism=Citrus sinensis; type=EST; length=579bp
TCCAACTAAGCTCTCTCCTGATCAGAGTGTGGAACTGGCAAGTGAAGCTG
TGGAATTCCTACGTGGTATCTTCGGATTGTATGACATTGATAATGATGGA
GCAGTGAGGCCTGCGGAGCTTGAGGATCTATTTTTAACTGCACCAGAAAG
TCCGTGGGATGAAGCTCCATACAAGGATGCTGCAGAGACAACAGCACTGG
GCAATTTAACACTCAAAGGTTTCGTGTCTAAGTGGGCTCTAATGACTCTG
CTTGACCCGCGACACAGTTTGGCAAATTTGATATACGTTGGATACGGTGG
TGATCCTGCTGCAGCACTCCGTGTTACTAGGAAAAGATCAGTAGATCGTA
AGAAGCAACAAACTGAAAGAAATGTTTTCCGTTGTCTCCTTTTTGGTCCA
CAAAATGCTGGAAAGTCTGCACTGTTGAATTCATTCTTGGAAAGGCCATT
CTCAGAAAATTATGCCCCAACAACCGGTGAGCAATATGCGGTGAATGTGG
TTGACCAGCCTGGGGGAAATAAGAAGACTCTTATTCTGCAAGAAATACCA
GAAGAAGGAGTGAAAAAATCCTGTCCACC
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