CN185811

Overview
NameCN185811
Unique NameCN185811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: PRP28_YARLI (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica GN=PRP28 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 44/132 (33.33%), Postives = 77/132 (58.33%), Query Frame = -1
Query:  399 KNRKLNDLLDALDFNQVVIFVKSVSRAAE-LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 791
            + R+L D++    +   ++   +  R  E ++  LV   + +  IH G  QE+R    +  K G   +LVATD+ GRG+DI  V++V+N+ M ++ ++Y HR+GR GR G +G A+TF+    D D+L +++
Sbjct:  417 RKRRLLDIISKRQYRPPIVVFLNYKRDCEAVSDALVAAGWRTAIIHGGKQQEQREQAVQHLKRGAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGKRGTAVTFLGQ-EDDDVLFELK 547          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = -1
Query:  363 RKLNDLLDALDFNQ-------VVIFVKSVSRAAELNKLLVECNFP-SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 785
            +KL+ L   L F++       ++IF        EL   L    F  +  IH   SQE R      F+EG  +IL+ATD+  RGIDI  V++V+NY M    D Y+HR+GR GR G KG + TF+    DS++   ++       K+ PE
Sbjct:  418 KKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSKSQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGNKGTSCTFIDD-GDSEVFLDLKKFLNKGKKKCPE 565          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = -1
Query:  354 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 791
            K+  L  +L+ L  N  +IF  + +       LL    F +I +H  MSQ +RL     FK   + IL+ATD+  RG+DI  V++V+N+D+P  +  Y+HRVGR  R G  G AITFV+   D ++  +++      +   P Q D
Sbjct:  250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ-YDVELFQRIEHLIGKKLPGFPTQDD 394          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = -1
Query:  372 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 749
            N  ++F  + +   ++  +L +    ++ +H  MSQE+RL     FK   + ILV TD+  RG+DI  V++VINYDMP  +  Y+HRVGR  R G  G+AIT V+   D +   +++A     + E
Sbjct:  284 NSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQ-YDVEAYQKIEANLGKKLDE 408          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = -1
Query:  354 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 791
            K+  L  +L+ L  N  +IF  + +       LL    F +I +H  MSQ +RL     FK   + IL+ATD+  RG+DI  V++V+N+D+P  +  Y+HRVGR  R G  G AITFV+   D ++  +++      +   P Q D
Sbjct:  252 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ-YDVELFQRIEHLIGKKLPVFPTQDD 396          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP8_MAGGR (ATP-dependent RNA helicase DBP8 OS=Magnaporthe grisea GN=DBP8 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = -1
Query:  393 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 743
            ++IFV   S A  L+ LL   +     +HS + Q++R+     F+    RILVATD+  RG+DI  V++V+NYD+P   D Y+HRVGR  R G KG A+ FV    D +++  ++ R
Sbjct:  394 IIIFVNRTSTAQFLHHLLRLLDHRVTSLHSKLRQQQRIDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRVGRTARAGRKGEAVNFVGQ-RDVELVLAIEKR 509          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = -1
Query:  354 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 740
            V+FV     A  L ++L +  F    +HS M Q ER      FK G  RIL+ATD+  RG+DI  V +V+N+D+P   D ++HRVGR  R G KG AI+ +    D + +  ++ R    + EL E +D
Sbjct:  260 VVFVNRTMTAEVLRRMLRKLEFKVASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISIIGE-KDIERIESIEERINKKM-ELLEGVD 386          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = -1
Query:  354 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI-KELPEQID 749
            N+V+IF  +   A ++ + L +  +P++ IH   +Q+ER      F+ G   I+VATD+  RGID++ +  V NYD P + + Y+HR+GR GR G KG A T+ +S       N  QAR  V I  E  + ID
Sbjct:  370 NKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSD------NAKQARELVSILSEAKQDID 496          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP1_CANGA (ATP-dependent RNA helicase DBP1 OS=Candida glabrata GN=DBP1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = -1
Query:  426 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 791
            KN  L D+L        ++FV++   A +L   L+  NF +  IH   +Q ER      F+ G   ILVAT +  RG+DI  V  VINYD+P   D Y+HR+GR GR G  G+A +F +S S
Sbjct:  382 KNSALLDILINEIDGLTLVFVETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNGIANILVATAVAARGLDIPNVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNS 503          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 46/131 (35.11%), Postives = 76/131 (58.02%), Query Frame = -1
Query:  399 KLNDLLDALDFNQ---VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 782
            K +   + LD +Q    ++F ++  R  EL   L+   + +  +H  ++Q +RL   K FK     ILVATD+  RG+DI  V+ V N+D+P   ++Y HR+GR GR G +G+A+TFV+   + D + Q++
Sbjct:  227 KFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPI-EMDYIRQIE 356          
The following BLAST results are available for this feature:
BLAST of CN185811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP28_YARLI3.315e-1733.33Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_DEBHA3.315e-1735.57Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX47_HUMAN3.315e-1734.93Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DDX47_CAEEL3.315e-1735.71Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
DDX47_BOVIN3.315e-1734.93Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
DBP8_MAGGR3.315e-1739.32ATP-dependent RNA helicase DBP8 OS=Magnaporthe gri... [more]
DBP8_LODEL3.315e-1737.98ATP-dependent RNA helicase DBP8 OS=Lodderomyces el... [more]
DBP2_SCHPO3.315e-1737.59ATP-dependent RNA helicase dbp2 OS=Schizosaccharom... [more]
DBP1_CANGA3.315e-1740.16ATP-dependent RNA helicase DBP1 OS=Candida glabrat... [more]
Y2316_STAA84.330e-1735.11Probable DEAD-box ATP-dependent RNA helicase SAOUH... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185811 ID=CN185811; Name=CN185811; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATCCATAGTGCAA
TAAAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAA
TAACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAAT
CCCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATC
TGACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAA
GAAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCA
AATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGA
TGTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCT
GAACCTGATTGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATT
GCAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATA
AGTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCT
CAATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTG
TTCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACAT
GCCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGT
TTAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTA
AAGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTT
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