CN185802

Overview
NameCN185802
Unique NameCN185802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: GRP78_KLULA (78 kDa glucose-regulated protein homolog OS=Kluyveromyces lactis GN=GRP78 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.906e-22
Identity = 50/110 (45.45%), Postives = 80/110 (72.73%), Query Frame = -1
Query:  291 ITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWL-DSNQLAEADEFEDKMKELESICNPIIAK 617
            ITI NDKGRLS+D+I++MV+EAEKY AED + K K EA+N  EN+ + ++N+V  E +   +D  DK+ + D ++++++WL D++ +AEA++FE+KM   +    PI+AK
Sbjct:  545 ITIANDKGRLSQDDIDRMVEEAEKYAAEDAKFKAKSEARNTFENFVHYVKNSVNGE-LAEIMDEDDKETVLDNVNESLEWLEDNSDVAEAEDFEEKMASFKESVEPILAK 653          
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: HSP70_CERCA (Heat shock protein 70 OS=Ceratitis capitata PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.957e-22
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = -1
Query:  192 RKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGSAAGPKIEEVD 623
            + ITI NDKGRLS+ EI++MV EA +Y  EDE  + K+ A+N LE+Y   ++       +  KL   +K ++  A D  I+WLD+ +LA+ +E+EDKM  L  +C PI+ K++                   G   GP +EEVD
Sbjct:  497 KNITIKNDKGRLSQAEIDRMVNEAGRYAEEDERQRNKIAARNNLESYVLAVKQAW--TTLVDKLSEREKSEVTKACDDTIKWLDATRLADKEEYEDKMNTLTKLCTPIMTKLHSGGGAGQGASCGQQAGGFNGGHTGPTVEEVD 638          
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: HSP7X_PIG (Heat shock 70 kDa protein (Fragment) OS=Sus scrofa PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.460e-21
Identity = 55/144 (38.19%), Postives = 86/144 (59.72%), Query Frame = -1
Query:  192 KITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQA-IQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGSAAGPKIEEVD 620
            K+T+T+DKGRLSK+E+E+MV+EA  +K EDE  + +V AKN+LE Y ++++ ++ +E +  K+   D+ K++D   +    WL+ NQLAE +E+E + +ELE      IA + Q                  G + GP IEEVD
Sbjct:  241 KMTLTSDKGRLSKEEVERMVREAASHKVEDEAQRDRVAAKNSLEAYVFHVKGSLHEESLRDKIPEEDRCKVQDKCQEVPYLWLEHNQLAEKEEYEHQKRELEQ-----IASISQLLGPCTWGSSCGAQAPKGGPSTGPVIEEVD 379          
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: GRP78_PIG (78 kDa glucose-regulated protein (Fragment) OS=Sus scrofa GN=HSPA5 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.720e-20
Identity = 44/95 (46.32%), Postives = 74/95 (77.89%), Query Frame = -1
Query:  339 KITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFE 620
            KITITND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY ++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+
Sbjct:  167 KITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYCLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFK 261          
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: HSP70_ONCVO (Heat shock 70 kDa protein (Fragment) OS=Onchocerca volvulus PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.552e-20
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = -1
Query:  432 KITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKL 620
            KITITNDKGRLSKDEIE+MVQEAEKYKA+DE  K ++ AKNALE+YA+NM+ T++DEK+  K+
Sbjct:  257 KITITNDKGRLSKDEIERMVQEAEKYKADDEAQKDRIAAKNALESYAFNMKQTIEDEKLKDKI 319          
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: HSP70_MIMIV (Heat shock 70 kDa protein homolog OS=Acanthamoeba polyphaga mimivirus GN=HSP70 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 43/144 (29.86%), Postives = 81/144 (56.25%), Query Frame = -1
Query:  192 RKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGSAAGPKIEEVD 623
            + ITITN++GR S+D+IE+M++EA++++  D + K  V++KN LENY ++++  V D    + ++ + + +IE    + ++++D N   +   ++ + KELE + NPI   +Y                     + GP +EEVD
Sbjct:  499 KNITITNNRGRFSEDQIERMIREAKEFEEADNKKKAAVDSKNELENYTHSVKQAVTDPSNSNNIEESSRSQIESKCAEIMKFVDENPNEDQGTYDLRRKELEDLWNPIAVTLY--------AQKNNQSNQTSTESTGPTVEEVD 634          
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  291 ITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAK 617
            ITI+N  GRLS +EIEKMV +AE++KA DE   KK EA+  LE+Y  ++  TV D  + SKL    K KIE A+  A+  L        D   D++++ E     ++ K
Sbjct:  505 ITISNAVGRLSSEEIEKMVNQAEEFKAADEAFAKKHEARQRLESYVASIEQTVTDPVLSSKLKRGSKSKIEAALSDALAALQIE-----DPSADELRKAEVGLKRVVTK 608          
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: HSP75_ZYGRC (Heat shock protein SSB OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=SSB PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = -1
Query:  348 ITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEAD 617
            ITI+N  GRLS DEIEKMV +AE++KA DE   KK EA+  LE+Y  ++   V D  + SKL    K KIE A+  A+  L+    +  D
Sbjct:  505 ITISNAVGRLSSDEIEKMVNQAEEFKAADEAFAKKHEARQRLESYVASIEQQVTDPVLSSKLKRGSKTKIESALSDALASLEIQDASTDD 594          
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  291 ITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAK 617
            ITI+N  GRLS +EIEKMV +AE++KA DE   KK EA+  LE+Y  ++  TV D  + SKL    K KIE A+  A+  L        D   D++++ E     ++ K
Sbjct:  505 ITISNAVGRLSSEEIEKMVNQAEEFKAADEAFAKKHEARQRLESYVASIEQTVTDPVLSSKLKRGSKSKIEAALSDALAALQIE-----DPSADELRKAEVGLKRVVTK 608          
BLAST of CN185802 vs. ExPASy Swiss-Prot
Match: HSP75_CANAL (Heat shock protein SSB1 OS=Candida albicans GN=SSB1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = -1
Query:  342 ITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEF 617
            ITI+N  GRLS +EIEKM+ +AEK+K+ D+   K+ E K  LE Y  ++ +TV D  + +KL  + K KIE A+  A+Q L+  + + AD++
Sbjct:  505 ITISNSIGRLSTEEIEKMISDAEKFKSSDDAFAKRHEQKQKLEAYVASVESTVTDPVLSAKLKKSAKDKIEAALSDALQTLEIEE-SSADDY 595          
The following BLAST results are available for this feature:
BLAST of CN185802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
GRP78_KLULA2.906e-2245.4578 kDa glucose-regulated protein homolog OS=Kluyve... [more]
HSP70_CERCA4.957e-2237.50Heat shock protein 70 OS=Ceratitis capitata PE=2 S... [more]
HSP7X_PIG2.460e-2138.19Heat shock 70 kDa protein (Fragment) OS=Sus scrofa... [more]
GRP78_PIG2.720e-2046.3278 kDa glucose-regulated protein (Fragment) OS=Sus... [more]
HSP70_ONCVO3.552e-2071.43Heat shock 70 kDa protein (Fragment) OS=Onchocerca... [more]
HSP70_MIMIV2.155e-1729.86Heat shock 70 kDa protein homolog OS=Acanthamoeba ... [more]
HSP76_YEAST2.466e-1340.37Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_ZYGRC2.466e-1345.56Heat shock protein SSB OS=Zygosaccharomyces rouxii... [more]
HSP75_YEAST2.466e-1340.37Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]
HSP75_CANAL4.206e-1342.39Heat shock protein SSB1 OS=Candida albicans GN=SSB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001O07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185802 ID=CN185802; Name=CN185802; organism=Citrus sinensis; type=EST; length=623bp
TTTTAGGGACTGAAAATATTCATTATATAAATTGGTCCGAATTACCAGTA
AAATTTGAAAAATAAAAAGAAAAGGAAAAATTAATATTCATCCTAAGGCT
AAAGCAACATAAGATAAAAACCAAACGTCCAGTTTTCCCACCGTCAAAAA
ACCGACCTCCCACAAACACAGCAAAATAAACTGGAAGCTTAGTCAACTTC
CTCAATCTTGGGACCGGCGGCACTGCCACCAGCTGGAGGAGTATCATCAT
CCATGTCACCGCCCATATCACCACCAGCACCTTGATACATCTTGGCAATG
ATGGGATTGCAGATGCTCTCAAGCTCCTTCATCTTGTCTTCAAATTCATC
GGCCTCAGCCAGCTGGTTGCTATCAAGCCATTGAATTGCCTGGTCAATGG
CATCCTCAATCTTCTTCTTGTCAGCTGGATCAAGTTTGGAGCCGATCTTC
TCGTCCTTGACAGTGTTCCTCATATTGTAGGCATAGTTTTCCAAGGCATT
CTTGGCCTCGACCTTCTTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCT
CGGCCTCTTGAACCATCTTCTCAATTTCATCCTTTGACAATCTACCCTTG
TCGTTGGTGATTGTGATCTTCCT
back to top