CN185798

Overview
NameCN185798
Unique NameCN185798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185798_ssr287 microsatellite CN185798_ssr287:287..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:89..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.511e-53
Identity = 110/229 (48.03%), Postives = 142/229 (62.01%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            T+YY+ILGV  +AS +++KKAYRK A+K HPDK  D  EKFK ++QAYEVLSDP+KR++YDQ GE A+KE          P DI                       ++V+H L V+LEDLYNG +KKL+L +NVI                    +G GM++ I+ +GP M+QQ+Q  C ECKG GE IN KDRC  C G KVI+EKK++EV VEKGM++GQKI F G
Sbjct:    5 TQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRG------KNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCESCSGAKVIREKKIIEVHVEKGMKDGQKILFHG 227          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.022e-52
Identity = 111/229 (48.47%), Postives = 141/229 (61.57%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            T+YY+ILGV  +AS +++KKAYRK A+K HPDK  D  EKFK ++QAYEVLSDP+KR+IYDQ GE A+KE          P DI                       ++V+H L V+LEDLYNG +KKL+L +NVI                    +G GM+V I+ +GP M+QQ+Q  C ECKG GE IN KDRC  C G KV +EKK++EV VEKGM++GQKI F G
Sbjct:    5 TQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMTRERRG------KNVVHQLSVTLEDLYNGITKKLALQKNVICEKCEGIGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCENCSGAKVTREKKIIEVHVEKGMKDGQKILFHG 227          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.286e-51
Identity = 104/229 (45.41%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KDRC  C G K+++EKK+LEV ++KGM++GQKITF G
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFG-SPMDIFDMFFGGGRMQRERRG-------KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHG 225          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.286e-51
Identity = 104/229 (45.41%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KDRC  C G K+++EKK+LEV ++KGM++GQKITF G
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFG-SPMDIFDMFFGGGGRMQRERRG------KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHG 226          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.286e-51
Identity = 104/229 (45.41%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KDRC  C G K+++EKK+LEV ++KGM++GQKITF G
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFG-SPMDIFDMFFGGGGRMQRERRG------KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHG 226          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.292e-51
Identity = 104/229 (45.41%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KDRC  C G K+++EKK+LEV ++KGM++GQKITF G
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFG-SPMDIFDMFFGGGGRMQRERRG------KNVVHQLTVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHG 226          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJA1_RAT (DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.321e-51
Identity = 103/229 (44.98%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVL+D +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KDRC  C G K+++EKK+LEV ++KGM++GQKITF G
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQAIKEGGAGGGFG-SPMDIFDMFFGGGGRMQRERRG------KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHG 226          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.321e-51
Identity = 103/229 (44.98%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVL+D +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G GE I+ KDRC  C G K+++EKK+LEV ++KGM++GQKITF G
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQAIKEGGAGGGFG-SPMDIFDMFFGGGGRMQRERRG------KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHG 226          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.294e-43
Identity = 97/227 (42.73%), Postives = 129/227 (56.83%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 751
            TK YE+L V   ASQ +LKKAYRK A+K HPDK  +  +KFKE+++AYE+L+D EKR  YD++GE+ L+        + D                           +D++H +KV+LEDLY G + KL+L + VI                     GSG+K   R +GP MIQ+MQ  C +C G GETI D+DRC +C G KVI ++K+L V VEKGM NGQKI F
Sbjct:    5 TKLYEVLNVDVTASQAELKKAYRKLALKYHPDKNPNAGDKFKEISRAYEILADEEKRATYDRFGEEGLQGGGADGGMSADDL----FASFFGGGMFGGGMPRGPRKGKDLVHTIKVTLEDLYRGKTTKLALQKKVICPKCSGRGGKEGSVKSCASCNGSGVKFITRAMGP-MIQRMQMTCPDCNGAGETIRDEDRCKECDGAKVISQRKILTVHVEKGMHNGQKIVF 226          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: MAS5_YEAST (Mitochondrial protein import protein MAS5 OS=Saccharomyces cerevisiae GN=YDJ1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.756e-42
Identity = 93/231 (40.26%), Postives = 125/231 (54.11%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            TK+Y+ILGV   A+  ++KKAYRK A+K HPDK    E   KFKE + AYE+LSDPEKR+IYDQ+GED L             F                         +D+ H +  SLE+LY G + KL+L++ ++                     G G+K   R +GP MIQ+ Q  C+ C GTG+ I+ KDRC  C G+KV  E+K+LEV VE GM++GQ+I F G
Sbjct:    5 TKFYDILGVPVTATDVEIKKAYRKCALKYHPDKNPSEEAAEKFKEASAAYEILSDPEKRDIYDQFGEDGLSGAGGAGGFPGGGFGFGDDIFSQFFGAGGAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKG 234          
The following BLAST results are available for this feature:
BLAST of CN185798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJA4_HUMAN3.511e-5348.03DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
DNJA4_MOUSE1.022e-5248.47DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA1_PONAB3.286e-5145.41DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]
DNJA1_HUMAN3.286e-5145.41DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
DNAJ1_CERAE3.286e-5145.41DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA1_BOVIN4.292e-5145.41DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
DNJA1_RAT7.321e-5144.98DnaJ homolog subfamily A member 1 OS=Rattus norveg... [more]
DNJA1_MOUSE7.321e-5144.98DnaJ homolog subfamily A member 1 OS=Mus musculus ... [more]
MAS5_SCHPO3.294e-4342.73Mitochondrial protein import protein mas5 OS=Schiz... [more]
MAS5_YEAST4.756e-4240.26Mitochondrial protein import protein MAS5 OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185798 ID=CN185798; Name=CN185798; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTACTCTGAAGATCTGAAATTTTTTAGTACAAGAAGATGTTCGGAA
GAGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAGATTCTCGGAGTC
TCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTATAGGAAAGCCGC
CATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGAAGTTTAAAGAGT
TGGCACAAGCGTATGAGGTTCTGAGTGACCCAGAGAAGCGTGAAATATAT
GATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGGTGGTGGTGGTGG
TGCCCATGACCCATTCGACATATTCCAATCCTTCTTCGGTGGCAGCCCAT
TTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGGGGAGAGGACGTA
ATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAATGGGACATCTAA
GAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGTGCAAAGGGAAGG
GGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGCCAGGGATCTGGA
ATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGATTCAACAAATGCA
GCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAATCAATGACAAGG
ATCGCTGCCCACAATGTAAGGGTGAGAAGGTCATTCAGGAGAAAAAAGTC
TTGGAGGTTATTGTTGAGAAGGGGATGCAAAATGGACAGAAGATTACGTT
CCCTGGAGA
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