CN185798

Overview
NameCN185798
Unique NameCN185798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185798_ssr287 microsatellite CN185798_ssr287:287..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:89..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: PSI1_SCHPO (Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 2
Query:   71 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPE-KFKELAQAYEVLSDPEKREIYDQYG 262
            +TK Y+ L V   AS+ +LKKAYRK A+K HPDK  + E KFKE++ AYEVLSDP++R++YDQYG
Sbjct:    4 DTKLYDCLEVRPEASEAELKKAYRKLALKYHPDKNPNGEKKFKEISLAYEVLSDPQRRKLYDQYG 68          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOTN (Chaperone protein dnaJ OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYG 262
            YYE+LGVSKNA++D++KKAYRK + + HPD    P   EKFKE+ +AYEVLSD EKR  YD++G
Sbjct:    6 YYEVLGVSKNATKDEIKKAYRKLSKQYHPDINKAPDAAEKFKEIKEAYEVLSDDEKRARYDRFG 69          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DJB13_HUMAN (DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 50/162 (30.86%), Postives = 79/162 (48.77%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK------------------------EXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXED--VIHPLKVSLEDLYNGTSKKLSLSRNVI 478
            YY +LG+++N+    +K+AYR+ A+K+HP K  +P   E F+++A+AY+VLSDP KR IYD++GE+ LK                        +        ++PF                         +D  V   L +SLEDL+ G +KK+ +SR V+
Sbjct:    5 YYSVLGITRNSEDAQIKQAYRRLALKHHPLKSNEPSSAEIFRQIAEAYDVLSDPMKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGKPEKVFHEFFGGNNPFSEFFDAEGSEVDLNFGGLQGRGVKKQDPQVERDLYLSLEDLFFGCTKKIKISRRVL 166          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_PROA2 (Chaperone protein dnaJ OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.442e-14
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYG 262
            YYE+LGV ++A++D++KKAYRK A+K HPDK  D     EKFKE  +AYEVLS+ +KR  YDQ+G
Sbjct:    5 YYEVLGVGRSATKDEIKKAYRKLAMKYHPDKNPDNSEAEEKFKEANEAYEVLSNDDKRRRYDQFG 69          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP7 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.442e-14
Identity = 63/234 (26.92%), Postives = 99/234 (42.31%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG---GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE------XXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSR-NVIXXXXXXXXXXXXXXXXXXXXQGSGM--KVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 745
            YYEILGVS++A++D++K+AYR+ A K HPD     G  E+FKE+ +AYE+LS+PE R  YD++GE  +                 D F+                        +D+    K++  +   G  K++ +                           GSG   + +    G      +   CN   G+GE I +K  C  C G    QE K L++ +  G+ NG ++
Sbjct:    5 YYEILGVSRDANKDEIKRAYRRLARKYHPDVNKEIGAEERFKEINRAYEILSEPETRARYDRFGEAGVSSGAGSGFEYGDMGGIADIFETIFSGFGGMGTGTSSRRRTGPVRGDDLRLDFKLNFREAVFGGEKEIRIRHLETCQVCEGSGAKPGTGSRTCSTCSGSGQVRRATRTPFGTFAQVSVCPTCN---GSGEVIEEK--CEACGGSGRKQETKKLKITIPAGVDNGTRL 233          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLL2 (Chaperone protein dnaJ OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.442e-14
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYG 262
            YYE+LGVS++AS+D++KKAYRK A++ HPDK  D     E FKE+ +AYEVLS+ +KR  YDQ+G
Sbjct:    5 YYEVLGVSRSASKDEIKKAYRKLALQYHPDKNPDNKDAEEHFKEVNEAYEVLSNDDKRRRYDQFG 69          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCN (Chaperone protein dnaJ OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.442e-14
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYG 262
            YYE+LGVSK+AS+D++KKAYR+ A K HPD   +    EKFKE+ +AYEVLSD +KR  YDQ+G
Sbjct:    6 YYEVLGVSKSASKDEIKKAYRRLAKKYHPDVSKEENAVEKFKEVQEAYEVLSDEQKRAQYDQFG 69          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_CALS8 (Chaperone protein dnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDA 271
            YYEILGV +NA+Q+++K+AYR+ A + HPD         EKFKE+ +AYEVLSDPEKR  YDQ+G  A
Sbjct:    7 YYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYEVLSDPEKRRKYDQFGHAA 74          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_MICAN (Chaperone protein dnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.460e-14
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 2
Query:   74 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGE 265
            T YYEILGVS++A ++D+K+AYR+ A K HPD   +P   E FKE+ +AYE+LS+PE R  YD++GE
Sbjct:    3 TDYYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRNRYDRFGE 69          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_OCEIH (Chaperone protein dnaJ OS=Oceanobacillus iheyensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.213e-14
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYG 262
            YYEILG+ K+ASQD++KK YRK A K HPD   +    EKFKE+ +AYEVLSD +KR  YDQ+G
Sbjct:    6 YYEILGIDKSASQDEIKKNYRKLARKYHPDVNKEADAAEKFKEVKEAYEVLSDDQKRAQYDQFG 69          
The following BLAST results are available for this feature:
BLAST of CN185798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PSI1_SCHPO1.104e-1460.00Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 ... [more]
DNAJ_GEOTN1.104e-1460.94Chaperone protein dnaJ OS=Geobacillus thermodenitr... [more]
DJB13_HUMAN1.104e-1430.86DnaJ homolog subfamily B member 13 OS=Homo sapiens... [more]
DNAJ_PROA21.442e-1458.46Chaperone protein dnaJ OS=Prosthecochloris aestuar... [more]
DNAJ_CYAP71.442e-1426.92Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNAJ_CHLL21.442e-1458.46Chaperone protein dnaJ OS=Chlorobium limicola (str... [more]
DNAJ_BACCN1.442e-1460.94Chaperone protein dnaJ OS=Bacillus cereus subsp. c... [more]
DNAJ_CALS81.883e-1457.35Chaperone protein dnaJ OS=Caldicellulosiruptor sac... [more]
DNAJ_MICAN2.460e-1455.22Chaperone protein dnaJ OS=Microcystis aeruginosa (... [more]
DNAJ_OCEIH3.213e-1460.94Chaperone protein dnaJ OS=Oceanobacillus iheyensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185798 ID=CN185798; Name=CN185798; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTACTCTGAAGATCTGAAATTTTTTAGTACAAGAAGATGTTCGGAA
GAGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAGATTCTCGGAGTC
TCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTATAGGAAAGCCGC
CATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGAAGTTTAAAGAGT
TGGCACAAGCGTATGAGGTTCTGAGTGACCCAGAGAAGCGTGAAATATAT
GATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGGTGGTGGTGGTGG
TGCCCATGACCCATTCGACATATTCCAATCCTTCTTCGGTGGCAGCCCAT
TTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGGGGAGAGGACGTA
ATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAATGGGACATCTAA
GAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGTGCAAAGGGAAGG
GGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGCCAGGGATCTGGA
ATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGATTCAACAAATGCA
GCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAATCAATGACAAGG
ATCGCTGCCCACAATGTAAGGGTGAGAAGGTCATTCAGGAGAAAAAAGTC
TTGGAGGTTATTGTTGAGAAGGGGATGCAAAATGGACAGAAGATTACGTT
CCCTGGAGA
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