CN185798

Overview
NameCN185798
Unique NameCN185798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185798_ssr287 microsatellite CN185798_ssr287:287..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:89..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_METTH (Chaperone protein dnaJ OS=Methanobacterium thermoautotrophicum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.347e-20
Identity = 70/240 (29.17%), Postives = 105/240 (43.75%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYG---------EDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQH--PCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYEILGV + A + ++KKAYR+ A K HPD   DP   EKFKE+++AY VLSD EKR  YD++G         ED           +   FDI                        D+ + L +SLED YNG    + +                         Q  G    +R +  +++ QM +   C +C+G G  +  +  C  C G+ V+++   + V V  G++ G ++  PG
Sbjct:    6 YYEILGVDRGADKKEIKKAYRRLARKYHPDVSDDPDAAEKFKEISEAYAVLSDDEKRARYDRFGHAGMDGFSQEDIFNNINFEDIFSGLGFDI---GNIFDMFGFGGGRRHGPQRGADISYTLDISLEDAYNGLETDIRVPHT--KKCPVCHGSRAEPGTGTRTCQTCGGSGQVRQVRNTILGQMMNITTCPDCQGEGTVV--EKPCSNCNGKGVVRKTSTIHVKVPAGVETGSRLRVPG 238          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_STRT2 (Chaperone protein dnaJ OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.759e-20
Identity = 67/237 (28.27%), Postives = 105/237 (44.30%), Query Frame = 2
Query:   68 DNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK----EXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            +NT+YY+ LG+SK+ASQD++K+AYRK + K HPD   +P   EK+KE+ +AYE LSD +KR  YDQYG D       +           F                         +D+ + + +S E+   G  K++  +R V                           +++    P  + + Q  C+ C GTG+ I  KD C  C G    ++   + V +  G++ GQ+I   G
Sbjct:    2 NNTEYYDRLGLSKDASQDEIKRAYRKLSKKYHPDINKEPGAEEKYKEILEAYETLSDAQKRAAYDQYGPDGANGFGGQGSFGGFDGGAGFGGFEDIFSSFFGGGATRNPNAPRQGDDLQYRVNLSFEEAVFGAEKEIHYNREVTCKTCSGSGAKPGTSPVTCGRCHGHGVINVDTQTPLGMMRRQVTCDVCHGTGQEI--KDPCQTCHGTGREKQSHTVSVKIPAGVETGQQIRLAG 236          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_STRT1 (Chaperone protein dnaJ OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.759e-20
Identity = 67/237 (28.27%), Postives = 105/237 (44.30%), Query Frame = 2
Query:   68 DNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK----EXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            +NT+YY+ LG+SK+ASQD++K+AYRK + K HPD   +P   EK+KE+ +AYE LSD +KR  YDQYG D       +           F                         +D+ + + +S E+   G  K++  +R V                           +++    P  + + Q  C+ C GTG+ I  KD C  C G    ++   + V +  G++ GQ+I   G
Sbjct:    2 NNTEYYDRLGLSKDASQDEIKRAYRKLSKKYHPDINKEPGAEEKYKEILEAYETLSDAQKRAAYDQYGPDGANGFGGQGSFGGFDGGAGFGGFEDIFSSFFGGGATRNPNAPRQGDDLQYRVNLSFEEAVFGAEKEIHYNREVTCKTCSGSGAKPGTSPVTCGRCHGHGVINVDTQTPLGMMRRQVTCDVCHGTGQEI--KDPCQTCHGTGREKQSHTVSVKIPAGVETGQQIRLAG 236          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSU (Chaperone protein dnaJ OS=Bacillus subtilis GN=dnaJ PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.759e-20
Identity = 65/232 (28.02%), Postives = 103/232 (44.40%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXA---HDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYE+LGVSK+AS+D++KKAYRK + K HPD   + G  EKFKE+ +AYE LSD +KR  YDQ+G     +              F                          D+ + + +S ED   G    + + R                        G   ++++    P      +  C+ C+GTG+ I  K++C  C G+  I+++K + V +  G+ +GQ++   G
Sbjct:    6 YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRAHYDQFGHTDPNQGFGGGGFGGGDFGGFGFDDIFSSIFGGGTRRRDPNAPRQGADLQYTMTLSFEDAAFGKETTIEIPREETCETCKGSGAKPGTNPETCSHCGGSGQLNVEQNTPFGKVVNRRVCHHCEGTGKII--KNKCADCGGKGKIKKRKKINVTIPAGVDDGQQLRLSG 235          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_THICR (Chaperone protein dnaJ OS=Thiomicrospira crunogena (strain XCL-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20
Identity = 71/236 (30.08%), Postives = 103/236 (43.64%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPE----KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKV--SIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYEIL VS  AS+ ++KKAYRK A++ HPD+  D E    KFKE ++AYEVLSD +KR+ YDQ+G   +             F                          D+ + L+VSLED   GT+  + +    +                     GS ++   + + +G   +QQ    +   C  C GTG+ +  K  C  C+GE      K L V +  G+ NG +I   G
Sbjct:    6 YYEILEVSATASEGEIKKAYRKLAMRYHPDRNPDDEEAEDKFKEASEAYEVLSDAQKRQAYDQFGHAGVDGSAGQGGFGGGGFADFGDIFGDIFGGGFGGGHRGPQPGSDLQYELEVSLEDAVAGTTVDVRIPTKEL----------CESCDGSGAEPGSDVQTCPTCQGIGQVRVQQGFFAVSRTCPNCHGTGKLV--KTPCKTCRGEGYKHSSKTLSVKIPAGVDNGDRIRLQG 229          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_RALME (Chaperone protein dnaJ OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20
Identity = 72/245 (29.39%), Postives = 108/245 (44.08%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKE---------XXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKV--SIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYE+LGV KNAS D++KKAYRK A+K+HPD+  D     EKFKE+ +AYE+LSDPEK+  YDQYG   +                  A    DI                        D+ + +++SLE   +G   ++ +                          GS ++   +   +G   + Q    MQ  C +C G+G+ I     C +C G+  ++ +K LEV +  G+  G +I   G
Sbjct:    6 YYEVLGVGKNASDDEIKKAYRKLAMKHHPDRNPDNKEAEEKFKEVKEAYEMLSDPEKKAAYDQYGHAGVDPNMAGGFGGGGFGGGGFAEAFGDIFGDIFGQAAGGGRRGGGPQAYRGADLRYSMEISLEQAAHGHEAQIRVPH----------WDDCEHCHGNGAEPGSSVETCPTCNGVGQVRVSQGFFTMQQTCPKCHGSGKFI--PKPCTKCHGQGKLKSQKTLEVKIPAGIDEGMRIRSSG 238          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSL (Chaperone protein dnaJ OS=Geobacter sulfurreducens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20
Identity = 73/246 (29.67%), Postives = 107/246 (43.50%), Query Frame = 2
Query:   65 SDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGE-----DALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKV--SIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            +D   YYE+LGV KNAS  ++KKA+RK AI+ HPDK  D     EKFKE+ +AYEVLSDP+KR  YDQ+G                  A  PF                         +D+ + +++S E+   G  K++ +                          G+  KV  + R  G    QQ    +   CN C G G  +  ++ C  C+G  +I++ K L V V  G++ G ++   G
Sbjct:    3 ADKRDYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRAQYDQFGHAGVGAGGFSGGGFGGFGAGTPFG-DIFGDIFGDIFGGRPRGSRGRRGDDLQYNMELSFEEAAFGAEKEIQV----------PYGKRCGDCGGSGAKPGTEPKVCPTCRGAGQVRFQQGFFSVSKTCNHCNGEGRVV--ENPCTSCRGSGMIRDTKTLSVKVPAGVETGTRLKLSG 235          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_DIAST (Chaperone protein dnaJ OS=Diaphorobacter sp. (strain TPSY) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20
Identity = 75/237 (31.65%), Postives = 108/237 (45.57%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF----DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            +YE+LGV KNAS D+LKKAYRK A+K HPD+  GD      EKFKE  +AYE+LSD +KR  YDQYG   +           + F    +                         D+ + + V+LE+   G   ++ + S                        QGSG  V +R  G   +QQ    C  C+GTG+ I   + C  C G+  ++++K LEV +  G+ +G +I   G
Sbjct:    6 FYEVLGVPKNASDDELKKAYRKLAMKYHPDRNQGDAAKPAEEKFKEAKEAYEILSDAQKRAAYDQYGHAGVDPNMRGGMGGAEGFGGFAEAFGDIFGDMFGGARGRGGRQVYRGNDLSYAMDVTLEEAAKGKEAQIRIPSWESCETCHGSGAKPGTSAKTCGTCQGSG-TVQMRQ-GFFSVQQ---TCPHCRGTGKII--PEPCTACHGQGRVKKQKTLEVKIPAGIDDGMRIRSTG 235          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_METCA (Chaperone protein dnaJ OS=Methylococcus capsulatus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 74/245 (30.20%), Postives = 105/245 (42.86%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGE---DALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMK--------VSIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYE LGV +NAS  D+KKA+R+ A+K HPD+  D     E+FK + +AY+VLSDP+KR  YDQ+G    D             D F                          D+ + L+++LE+   GT  K+ +   V                      GSG K         +    G   +QQ    +Q  C  C+GTG+ I+D   C  C G+  +QE K L V +  G+  G +I   G
Sbjct:    6 YYETLGVPRNASDSDIKKAFRRLAMKYHPDRNKDNPEAEERFKSVKEAYDVLSDPKKRSAYDQFGHAGIDPSMGGGGGFGFTGDSFSDIFGDVFGDIFGGGGRRRGRGQRGSDLRYNLELTLEEAVAGTEAKIKVPTWVTCTECG----------------GSGAKKGSAPVTCPTCHGQGAVRMQQGFFSVQQTCPTCRGTGQHISDP--CRVCYGQGRVQETKTLSVKIPPGVDTGDRIRLSG 232          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_FUSNP (Chaperone protein dnaJ OS=Fusobacterium nucleatum subsp. polymorphum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 70/250 (28.00%), Postives = 107/250 (42.80%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDP--FDI-------------XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYE+LGV KNAS++D+KKAYRKAA+K HPDK  +          EKFKE+ +AY+VLSD EK++ YDQ+G  A ++         +   FD                                      D+ + L+++LE+   G  K +   R                        G G  +  +      + Q Q  C +C GTG+    + +C  C+G    +E    ++ V  G+ +GQK+ + G
Sbjct:    6 YYEVLGVDKNASENDIKKAYRKAAMKYHPDKFANATDAEKKDAEEKFKEINEAYQVLSDNEKKQQYDQFGHAAFEQGGAGFGGGFNAGGFDFGDIFGDNIFGGGGGFGGFEGFSGFGGSSRRSYVEPGNDLRYNLEITLEEAAKGVEKTIKYKRTGKCEHCHGTGAEDDKMKTCPTCNGQG-TIKTQQRTILGVMQSQSVCPDCHGTGKV--PEKKCKHCRGTGTAKETVEKKINVPAGIDDGQKLKYAG 252          
The following BLAST results are available for this feature:
BLAST of CN185798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_METTH1.347e-2029.17Chaperone protein dnaJ OS=Methanobacterium thermoa... [more]
DNAJ_STRT21.759e-2028.27Chaperone protein dnaJ OS=Streptococcus thermophil... [more]
DNAJ_STRT11.759e-2028.27Chaperone protein dnaJ OS=Streptococcus thermophil... [more]
DNAJ_BACSU1.759e-2028.02Chaperone protein dnaJ OS=Bacillus subtilis GN=dna... [more]
DNAJ_THICR2.297e-2030.08Chaperone protein dnaJ OS=Thiomicrospira crunogena... [more]
DNAJ_RALME2.297e-2029.39Chaperone protein dnaJ OS=Ralstonia metallidurans ... [more]
DNAJ_GEOSL2.297e-2029.67Chaperone protein dnaJ OS=Geobacter sulfurreducens... [more]
DNAJ_DIAST2.297e-2031.65Chaperone protein dnaJ OS=Diaphorobacter sp. (stra... [more]
DNAJ_METCA3.000e-2030.20Chaperone protein dnaJ OS=Methylococcus capsulatus... [more]
DNAJ_FUSNP3.000e-2028.00Chaperone protein dnaJ OS=Fusobacterium nucleatum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185798 ID=CN185798; Name=CN185798; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTACTCTGAAGATCTGAAATTTTTTAGTACAAGAAGATGTTCGGAA
GAGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAGATTCTCGGAGTC
TCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTATAGGAAAGCCGC
CATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGAAGTTTAAAGAGT
TGGCACAAGCGTATGAGGTTCTGAGTGACCCAGAGAAGCGTGAAATATAT
GATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGGTGGTGGTGGTGG
TGCCCATGACCCATTCGACATATTCCAATCCTTCTTCGGTGGCAGCCCAT
TTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGGGGAGAGGACGTA
ATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAATGGGACATCTAA
GAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGTGCAAAGGGAAGG
GGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGCCAGGGATCTGGA
ATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGATTCAACAAATGCA
GCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAATCAATGACAAGG
ATCGCTGCCCACAATGTAAGGGTGAGAAGGTCATTCAGGAGAAAAAAGTC
TTGGAGGTTATTGTTGAGAAGGGGATGCAAAATGGACAGAAGATTACGTT
CCCTGGAGA
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