CN185798

Overview
NameCN185798
Unique NameCN185798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185798_ssr287 microsatellite CN185798_ssr287:287..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:89..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_SALRD (Chaperone protein dnaJ OS=Salinibacter ruber (strain DSM 13855) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.117e-20
Identity = 73/244 (29.92%), Postives = 108/244 (44.26%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAH-----------DPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNV----IXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQH--PCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKIT 748
            YY+ILGV ++AS  ++KKAYRK A++ HPD+   DPE   KFKE ++AYEVLSDPEKR+ YDQ+G D +                      D F                          D+   L ++LE++  GT K L L + +                          G+G    IR +  S+  Q+ +  PC  C+G G  I+  + C  C GE  +Q ++ + + V  G+  G  +T
Sbjct:    5 YYDILGVDEDASDKEIKKAYRKKAMEYHPDRNPDDPEAEQKFKEASEAYEVLSDPEKRQRYDQFGHDGVDSGAGGGRRGRGRGFHDIEDIFDAFSDIFGGAPGGGRGRGRSERGRGRPGSDLRVSLSLTLEEIAEGTEKNLRLQKYLECESCDGTGAEGGMGGQNFSMCPKCDGTG---EIRQVSRSVFGQVVNVQPCPRCEGEGRIID--NLCDDCGGEGRVQGEESISINVPPGVMEGNYLT 243          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_RICTY (Chaperone protein dnaJ OS=Rickettsia typhi GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.117e-20
Identity = 71/238 (29.83%), Postives = 106/238 (44.54%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPD--KGGDPE-KFKELAQAYEVLSDPEKREIYDQYGEDALKE-----XXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YY++LGVSK ASQ D+KKAY K A + HPD     D E KFKE+  AY+VL D +KR  YD++G DA +              HD  DI                        D+ + L + LE+ ++G  K +S S  V                      G         +G + IQQ    ++  C++C+G G+ I  K+ C +C G     +++ L + +  G++NG +I   G
Sbjct:    5 YYQVLGVSKTASQADIKKAYLKLAKQYHPDTTNAHDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQARGGGNNSGFHHDINDIFGDFFSDFMGSGRRKQTSSKIRGSDLKYDLTIKLEEAFHGIEKNISFSSEVKCDACHGTGSEKGETVTTCDSCGG--------VGVTRIQQGFFTLEQTCHKCQGNGQII--KNPCKKCHGMGRYHKQRNLSINIPAGVENGTRIRHSG 232          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_RICPR (Chaperone protein dnaJ OS=Rickettsia prowazekii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.117e-20
Identity = 70/238 (29.41%), Postives = 106/238 (44.54%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPD--KGGDPE-KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF-----DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YY++LGVSK ASQ D+KKAY K A + HPD     D E KFKE+  AY+VL D +KR  YD++G DA +         +  F     DI                        D+ + L + LE+ ++G  K +S S  V                      G         +G + IQQ    ++  C++C+G G+ I  K+ C +C G     +++ L + +  G++NG +I   G
Sbjct:    5 YYQVLGVSKTASQADIKKAYLKLAKQYHPDTTNANDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQSQQARGGGNNGSFHPDINDIFGDFFSDFMGSGRRKQTSSKIRGSDLKYDLTIKLEEAFHGIEKNISFSSEVKCDTCHGTGSEKGETITTCDACGG--------VGATRIQQGFFTLEQTCHKCQGNGQII--KNPCKKCHGMGRYHKQRNLSINIPAGVENGTRIRHTG 232          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLS (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.117e-20
Identity = 70/245 (28.57%), Postives = 105/245 (42.86%), Query Frame = 2
Query:   68 DNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALK-----------EXXXXXXXAHDPF-DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            +NT+YYE LGV KNASQD++KKAYRK + K HPD   + G  +K+KE+ +AYE LSD +KR  YDQYGE                       A   F                          +D+ + + +  E+   G  K++  +R  +                     G   ++++    P    Q Q  C+ C GTG+ I  K++C  C G    +    ++V V  G++ GQK+   G
Sbjct:    2 NNTEYYERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGASGGFGGFEDIFSSFFGGGGAQVNPNAPRQGDDLQYRINLKFEEAIFGVEKQVKYNREELCHTCDGSGAKAGTHPETCHKCGGRGQINVVRDTPLGRMQTQTTCDVCHGTGKEI--KEKCTTCHGSGHEKVAHTVKVTVPAGVETGQKMRLQG 244          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLM (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.117e-20
Identity = 70/245 (28.57%), Postives = 105/245 (42.86%), Query Frame = 2
Query:   68 DNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALK-----------EXXXXXXXAHDPF-DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            +NT+YYE LGV KNASQD++KKAYRK + K HPD   + G  +K+KE+ +AYE LSD +KR  YDQYGE                       A   F                          +D+ + + +  E+   G  K++  +R  +                     G   ++++    P    Q Q  C+ C GTG+ I  K++C  C G    +    ++V V  G++ GQK+   G
Sbjct:    2 NNTEYYERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGASGGFGGFEDIFSSFFGGGGAQVNPNAPRQGDDLQYRINLKFEEAIFGVEKQVKYNREELCHTCGGSGAKAGTHPETCHKCGGRGQINVVRDTPLGRMQTQTTCDVCHGTGKEI--KEKCTTCHGSGHEKVAHTVKVTVPAGVETGQKMRLQG 244          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_HALHL (Chaperone protein dnaJ OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.117e-20
Identity = 74/253 (29.25%), Postives = 112/253 (44.27%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAH---------DPFDIXXXXXXXXXXXXXXXXXXXXXXXE--DVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKV--------SIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYE+LGV+KNAS  ++KKAYR+ A K HPD+  GD    E+FKE+ +AYEVLSD +KR  YDQ+G   +          +         D  DI                          D+ + L++SLED   GT +++ +  +V                     +GSG +         + +  G   +QQ    +Q  C  C G G  + D   CP+C+G   ++++K L V +  G+  G +I   G
Sbjct:    6 YYEVLGVNKNASDAEIKKAYRRMAQKFHPDRNPGDEESAERFKEVKEAYEVLSDAQKRAAYDQFGHAGVDPSAGGGPRGYGGGAGPGGPDFSDIFSDVFGDIFGSGGGRGGGRSRAFRGADLRYTLELSLEDAVRGTEEQIQVPTHV----------------ECDACKGSGSRAGSKPQTCPTCKGHGDVRVQQGFFSIQQTCPRCGGEGTMVTDP--CPKCRGRGRVEDRKTLNVRIPAGVDTGDRIRLSG 240          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_BARHE (Chaperone protein dnaJ OS=Bartonella henselae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.117e-20
Identity = 68/248 (27.42%), Postives = 113/248 (45.56%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF------DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHL------GPSMIQ------QMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYEILGV++      LK A+RK A++ HPD+  GD E   KFKE+ +AYEVL DP+KR  YD++G  A +            F      DI                        D+ + ++V+LE+ ++G + ++++  +V+                    +GSG K   +        G   ++       ++  C  C G GETI  KD CP+C+G + +++ + L V +  G+++  +I   G
Sbjct:    5 YYEILGVTRECDDKKLKSAFRKLAMQYHPDRNAGDKEAERKFKEIGEAYEVLKDPQKRAAYDRFGHAAFENNNNGGGSPFSGFSAGGFADIFEDFFGEIMGGGHRKRSDGRERGADLSYNMEVTLEEAFSGKTAQINIPSSVV----------------CDACEGSGAKKGSKPQTCGTCHGAGRVRAAQGFFSIERTCPVCHGRGETI--KDPCPKCQGTRRVEKNRSLSVNIPAGIEDSTRIRLSG 234          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 277
            YY ILG+ K AS +D+KKAYRK A+K HPDK   P   EKFKE+A+AYEVLSDP+KREIYDQ+GE+ LK
Sbjct:    5 YYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLK 73          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 277
            YY ILG+ K A+ +D+KKAYRK A+K HPDK   P   EKFKE+A+AYEVLSDP+KREIYDQ+GE+ LK
Sbjct:    5 YYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLK 73          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 277
            YY ILG+ K AS +D+KKAYRK A+K HPDK   P   EKFKE+A+AYEVLSDP+KREIYDQ+GE+ LK
Sbjct:    5 YYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLK 73          
The following BLAST results are available for this feature:
BLAST of CN185798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_SALRD5.117e-2029.92Chaperone protein dnaJ OS=Salinibacter ruber (stra... [more]
DNAJ_RICTY5.117e-2029.83Chaperone protein dnaJ OS=Rickettsia typhi GN=dnaJ... [more]
DNAJ_RICPR5.117e-2029.41Chaperone protein dnaJ OS=Rickettsia prowazekii GN... [more]
DNAJ_LACLS5.117e-2028.57Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_LACLM5.117e-2028.57Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_HALHL5.117e-2029.25Chaperone protein dnaJ OS=Halorhodospira halophila... [more]
DNAJ_BARHE5.117e-2027.42Chaperone protein dnaJ OS=Bartonella henselae GN=d... [more]
DNJB4_PONAB6.683e-2068.12DnaJ homolog subfamily B member 4 OS=Pongo abelii ... [more]
DNJB4_MOUSE6.683e-2066.67DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]
DNJB4_HUMAN6.683e-2068.12DnaJ homolog subfamily B member 4 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185798 ID=CN185798; Name=CN185798; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTACTCTGAAGATCTGAAATTTTTTAGTACAAGAAGATGTTCGGAA
GAGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAGATTCTCGGAGTC
TCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTATAGGAAAGCCGC
CATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGAAGTTTAAAGAGT
TGGCACAAGCGTATGAGGTTCTGAGTGACCCAGAGAAGCGTGAAATATAT
GATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGGTGGTGGTGGTGG
TGCCCATGACCCATTCGACATATTCCAATCCTTCTTCGGTGGCAGCCCAT
TTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGGGGAGAGGACGTA
ATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAATGGGACATCTAA
GAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGTGCAAAGGGAAGG
GGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGCCAGGGATCTGGA
ATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGATTCAACAAATGCA
GCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAATCAATGACAAGG
ATCGCTGCCCACAATGTAAGGGTGAGAAGGTCATTCAGGAGAAAAAAGTC
TTGGAGGTTATTGTTGAGAAGGGGATGCAAAATGGACAGAAGATTACGTT
CCCTGGAGA
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