CN185798

Overview
NameCN185798
Unique NameCN185798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185798_ssr287 microsatellite CN185798_ssr287:287..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:89..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEBR (DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=dnj-20 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 76/237 (32.07%), Postives = 103/237 (43.46%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPE----KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMK-VSIRH------LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            +Y+ILGVSKNA+ + +KKAYRK A + HPD+  D E    KF++L+ AYEVLSD EKR +YD++GE+ + +        HDPF                          DV   L V+LE+ YNG   ++   + V                     Q SG +  + RH      +G    Q  Q                  C +C   K++QE KVLEV VE G   G    F G
Sbjct:   25 FYKILGVSKNANANQIKKAYRKQAKELHPDRNPDDEMANEKFQDLSAAYEVLSDKEKRAMYDRHGEEGVAKMGGGGGGGHDPFS--SFFGDFFGGGGGNGGDEGTPKGADVTIDLFVTLEEAYNGHFVEIKRKKAV-------------------YKQTSGTRQCNCRHEMRTEQMGQGRFQMFQVKV---------------CDECPNVKLVQENKVLEVEVEVGADEGHTQIFHG 225          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_YERE8 (Chaperone protein dnaJ OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 67/232 (28.88%), Postives = 108/232 (46.55%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKE-XXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYE+LGV K+A + ++KKAY++ A+K HPD+  D     E FKE+ +AYE+L+DP+KR  YDQYG  A ++             D                         D+ + + ++LE+   G +K++ + + N                      +G+G +V +R  G   +QQ    C  C G+G+ I  KD C +C G   +++ K L V +  G+  G +I   G
Sbjct:    6 YYEVLGVKKDADEREIKKAYKRLAVKYHPDRNQDENDTGENFKEVKEAYEILTDPQKRAAYDQYGHAAFEQGGMGGGGFGGGGADFTDIFGDVFGDIFGGGRRQRASRGSDLRYNMDLTLEEAVRGVTKEIRIPTLNECDVCHGSGAKPGSSPVTCSTCRGAG-QVHMRQ-GFFTVQQ---ACPTCHGSGQII--KDPCNKCHGHGRVEKSKTLSVKIPAGVDTGDRIRLSG 230          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMF (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 72/238 (30.25%), Postives = 107/238 (44.96%), Query Frame = 2
Query:   71 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF----DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            N  +Y  LGV++ A+ D++KKAYRK A+K HPD+  D     EKFKE+ +AYE LSD EKR +YDQYG  A +            F                             EDV   ++++LE+   G  K++++ +                        +GSG  V I+      I +MQ  C  C G G+ I  K+ C +C+G    +  K +EV +  G+ +GQ+I   G
Sbjct:    3 NQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQMFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTSPETCPTCKGSG-TVHIQ----QAIFRMQQTCPTCHGAGKHI--KEPCVKCRGAGRNKAVKTVEVNIPAGIDDGQRIRLSG 233          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMB (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup B GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 72/238 (30.25%), Postives = 107/238 (44.96%), Query Frame = 2
Query:   71 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF----DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            N  +Y  LGV++ A+ D++KKAYRK A+K HPD+  D     EKFKE+ +AYE LSD EKR +YDQYG  A +            F                             EDV   ++++LE+   G  K++++ +                        +GSG  V I+      I +MQ  C  C G G+ I  K+ C +C+G    +  K +EV +  G+ +GQ+I   G
Sbjct:    3 NQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQMFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTSPETCPTCKGSG-TVHIQ----QAIFRMQQTCPTCHGAGKHI--KEPCVKCRGAGRNKAVKTVEVNIPAGIDDGQRIRLSG 233          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMA (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup A GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 72/238 (30.25%), Postives = 107/238 (44.96%), Query Frame = 2
Query:   71 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF----DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            N  +Y  LGV++ A+ D++KKAYRK A+K HPD+  D     EKFKE+ +AYE LSD EKR +YDQYG  A +            F                             EDV   ++++LE+   G  K++++ +                        +GSG  V I+      I +MQ  C  C G G+ I  K+ C +C+G    +  K +EV +  G+ +GQ+I   G
Sbjct:    3 NQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQMFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTSPETCPTCKGSG-TVHIQ----QAIFRMQQTCPTCHGAGKHI--KEPCVKCRGAGRNKAVKTVEVNIPAGIDDGQRIRLSG 233          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIM0 (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup C (strain 053442) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 72/238 (30.25%), Postives = 107/238 (44.96%), Query Frame = 2
Query:   71 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF----DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            N  +Y  LGV++ A+ D++KKAYRK A+K HPD+  D     EKFKE+ +AYE LSD EKR +YDQYG  A +            F                             EDV   ++++LE+   G  K++++ +                        +GSG  V I+      I +MQ  C  C G G+ I  K+ C +C+G    +  K +EV +  G+ +GQ+I   G
Sbjct:    3 NQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQMFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTSPETCPTCKGSG-TVHIQ----QAIFRMQQTCPTCHGAGKHI--KEPCVKCRGAGRNKAVKTVEVNIPAGIDDGQRIRLSG 233          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIG1 (Chaperone protein dnaJ OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 72/238 (30.25%), Postives = 108/238 (45.38%), Query Frame = 2
Query:   71 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF----DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            N  +Y  LGV++ A+ D++KKAYRK A+K HPD+  D     EKFKE+ +AYE LSD EKR +YDQYG  A +            F                             EDV   ++++LE+   G  K++++ +                        +GSG  V I+      I +MQ  C  C+G G+ I  K+ C +C+G    +  K +EV +  G+ +GQ+I   G
Sbjct:    3 NQDFYATLGVARAATDDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQMFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGASPETCPTCKGSG-TVHIQ----QAIFRMQQTCPTCRGAGKHI--KEPCVKCRGVGRNKAVKTVEVNIPAGIDDGQRIRLSG 233          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_IDILO (Chaperone protein dnaJ OS=Idiomarina loihiensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 73/240 (30.42%), Postives = 108/240 (45.00%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKE--------XXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQ------MQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 745
            +Y++LGVSK+A++ D+KKAY++ A+K HPD+  GD +   KFKE+ QAYEVLSDP+KR++YDQYG +A ++                   F                          D+ + L +SLE+   G + +L +   V                     +GS  +      G   IQ       +Q  C +C+GTG  I  KD C  C G    +E K L V +  G+  G +I
Sbjct:    6 FYQVLGVSKDANERDIKKAYKRMAMKYHPDRTEGDKDMEIKFKEIKQAYEVLSDPQKRQMYDQYGHEAFEQARQGGAGHGAGGFGGGGADFADIFGDVFGDIFGGGRRQQARAQRGADLRYNLDMSLEEAVRGKTVELEIPTLV----------ECRDCNGSGAKKGSKPQTCGHCHGSGQIQMRQGFFAVQQTCPQCRGTGTII--KDPCRTCHGHGRKEETKTLSVKIPAGVDTGDRI 233          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_FRATW (Chaperone protein dnaJ OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 70/232 (30.17%), Postives = 106/232 (45.69%), Query Frame = 2
Query:   80 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXA--HDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            YYEIL VSK AS  ++K+AYRK A++ HPD+  GD E   KFKE+++AYE+LSD  KR  YDQ+G   + +           D FD                         D+ + L+++LE+ + G  K++++ R                        G G   +IR          +  C  C GTG +I D   C  C G   ++++K L+V + +G+ NG +I   G
Sbjct:    6 YYEILNVSKTASGVEIKRAYRKLAMEYHPDRNPGDKEAEIKFKEISEAYEILSDDSKRSRYDQFGHAGVNQQSGFGGTGGFEDIFD-----TFFGGGTSRGSNRSRASRGSDLEYTLEITLEEAFFGVEKEITIPRMESCDSCDGTGSKSRSKTTCHACHGQG---TIRR--QQGFFAFEQTCPVCNGTGYSITDP--CDACYGNGKVKKQKTLKVKIPEGVDNGDRIRLQG 225          
BLAST of CN185798 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRCR (Chaperone protein dnaJ OS=Ehrlichia chaffeensis (strain Arkansas) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 77/250 (30.80%), Postives = 116/250 (46.40%), Query Frame = 2
Query:   62 KSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF-----DI--XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKV---SIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 757
            KSD   YY++LGVSK+A+ +++KKAYRK A+K HPDK        EKFKEL++AY+VL D +KR  YD+YG +A           +  F     DI                          D+   ++++LED +NG  KK+ +S                        +GS   V   +   +G    QQ    ++  C+ C G GE I +K  C +C G   ++++  L V + KG+++G KI   G
Sbjct:    3 KSD---YYDLLGVSKSATPEEIKKAYRKMALKYHPDKNPGNKEAEEKFKELSEAYDVLIDQDKRAAYDKYGHNAFDSSGRGGFDFNSGFSGDFSDIFNDLFGGGFRGGRGSSRRHDSGAVGSDLRFDIEITLEDSFNG--KKVPIS---------YVTYVKCSSCSGSGSEGSAKSVQCSTCHGVGNVRTQQGFFTIERTCHVCNGEGEIIQNK--CKKCSGSGRVRDEVNLLVTIPKGIESGNKIRLNG 236          
The following BLAST results are available for this feature:
BLAST of CN185798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJ20_CAEBR6.683e-2032.07DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=... [more]
DNAJ_YERE86.683e-2028.88Chaperone protein dnaJ OS=Yersinia enterocolitica ... [more]
DNAJ_NEIMF6.683e-2030.25Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIMB6.683e-2030.25Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIMA6.683e-2030.25Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIM06.683e-2030.25Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIG16.683e-2030.25Chaperone protein dnaJ OS=Neisseria gonorrhoeae (s... [more]
DNAJ_IDILO6.683e-2030.42Chaperone protein dnaJ OS=Idiomarina loihiensis GN... [more]
DNAJ_FRATW6.683e-2030.17Chaperone protein dnaJ OS=Francisella tularensis s... [more]
DNAJ_EHRCR6.683e-2030.80Chaperone protein dnaJ OS=Ehrlichia chaffeensis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185798 ID=CN185798; Name=CN185798; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTACTCTGAAGATCTGAAATTTTTTAGTACAAGAAGATGTTCGGAA
GAGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAGATTCTCGGAGTC
TCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTATAGGAAAGCCGC
CATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGAAGTTTAAAGAGT
TGGCACAAGCGTATGAGGTTCTGAGTGACCCAGAGAAGCGTGAAATATAT
GATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGGTGGTGGTGGTGG
TGCCCATGACCCATTCGACATATTCCAATCCTTCTTCGGTGGCAGCCCAT
TTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGGGGAGAGGACGTA
ATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAATGGGACATCTAA
GAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGTGCAAAGGGAAGG
GGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGCCAGGGATCTGGA
ATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGATTCAACAAATGCA
GCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAATCAATGACAAGG
ATCGCTGCCCACAATGTAAGGGTGAGAAGGTCATTCAGGAGAAAAAAGTC
TTGGAGGTTATTGTTGAGAAGGGGATGCAAAATGGACAGAAGATTACGTT
CCCTGGAGA
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