Overview
Name DC900036
Unique Name DC900036
Type EST
Organism Citrus sinensis (Sweet orange)
Sequence length 508
Libraries
Library Name Type
VSS cdna_library
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900036 vs. ExPASy Swiss-Prot
Match:
SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)
HSP 1 Score: 84.3445 bits (207), Expect = 3.394e-16
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 49 TNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 327
T T D +I LKV GQD +E+ F++K +T LKKL +Y RQ V +NS+ FLF+G+R+ TP EL MED D I+ QTGG
Sbjct: 4 TETKPSSDGGEKKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIEVYQEQTGG 96
BLAST of DC900036 vs. ExPASy Swiss-Prot
Match:
SMT3_YEAST (Ubiquitin-like protein SMT3 OS=Saccharomyces cerevisiae GN=SMT3 PE=1 SV=1)
HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 1
Query: 40 SGVTNTPQEEDKKPNDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 327
S V + E K HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG R++ +QTP++L+MED D I+A Q GG
Sbjct: 4 SEVNQEAKPEVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 98
The following BLAST results are available for this feature:
BLAST of DC900036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 42
50 100 150 200 250 300 350 400 450 500 Expect = 3.39e-16 / Id = 45.16 Expect = 5.79e-16 / Id = 45.36 Sequence SUMO1_DANRE SMT3_YEAST
Match Name E-value Identity Description
SUMO1_DANRE 3.394e-16 45.16 Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]
SMT3_YEAST 5.790e-16 45.36 Ubiquitin-like protein SMT3 OS=Saccharomyces cerev... [more]
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Properties
Property Name Value
Genbank description DC900036 VSS Citrus sinensis cDNA clone VS27Q44 5, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>DC900036 ID=DC900036; Name=DC900036; organism=Citrus sinensis; type=EST; length=508bp GAGAGAGAGAGAGAGAGAGACGAAGCAGAAGAGAGAATGTCAGGCGTCAC GAACACTCCGCAAGAGGAAGATAAGAAGCCCAACGATCAATCGGCTCACA TCAATCTCAAAGTCAAGGGCCAGGATGGGAATGAGGTTTTCTTCAGGATC AAACGAAGCACCCAACTAAAGAAGCTTATGAATGCATACTGTGATAGACA ATCTGTGGAGCTGAACTCAATTGCCTTCTTGTTTGATGGCCGCCGTCTTC GAGGAGAGCAAACCCCTGATGAGCTGGAAATGGAAGATGGTGATGAGATT GATGCCATGCTGCACCAAACCGGAGGAATGCTGATGTTCTAATTATGTAA TGCTCGTTTGAGAGCTTATTAGTAGTATTAATGTAAAACTATTTATGGAT GGATGTAAGTTATGCAGAGGCTCAAGATTGTGTATTTGTGATCTACACCA TTATGTTTGGATTACCTAAGTATGTAGCTCTTTCTTCAAGAGCCCTGATC GTTGCGGT back to top