CN185793

Overview
NameCN185793
Unique NameCN185793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3716 contig Csv1_Contig3716:210..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185793 vs. ExPASy Swiss-Prot
Match: UGPA2_DICDI (UTP--glucose-1-phosphate uridylyltransferase 2 OS=Dictyostelium discoideum GN=ugpB PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.734e-12
Identity = 43/121 (35.54%), Postives = 57/121 (47.11%), Query Frame = 2
Query:  122 NENEKNGFIN--------LVARYLSGESQHV*WSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVMEVRNGLTFLDLIVIHIENLNAKYGCNVPLLLM 460
            NE  KN F+N        L  R+L    + + W KI  P  ++V+ Y  L  + E                        MGCTGPKSV+EVR+  TFLDL V  I+ +N +Y   VPL+LM
Sbjct:   45 NETVKNEFLNKEIPSINKLFTRFLKNRKKVIDWDKINPPPADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTT--MGCTGPKSVIEVRSEKTFLDLSVQQIKEMNERYNIKVPLVLM 163          
BLAST of CN185793 vs. ExPASy Swiss-Prot
Match: UGPA_CRIGR (UTP--glucose-1-phosphate uridylyltransferase OS=Cricetulus griseus GN=UGP2 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.319e-11
Identity = 40/112 (35.71%), Postives = 55/112 (49.11%), Query Frame = 2
Query:  125 ENEKNGFINLVARYLSGESQHV*WSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVMEVRNGLTFLDLIVIHIENLNAKYGCNVPLLLM 460
            + + +GF  L  R+L  +   V W KIQ P ++ + PY+ +      P                      MGC GPKS++ VRN  TFLDL V  IE+LN  Y  +VPL+LM
Sbjct:   52 KKDLDGFRKLYHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKSYNTDVPLVLM 162          
BLAST of CN185793 vs. ExPASy Swiss-Prot
Match: UGPA_PIG (UTP--glucose-1-phosphate uridylyltransferase OS=Sus scrofa GN=UGP2 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.335e-11
Identity = 40/112 (35.71%), Postives = 55/112 (49.11%), Query Frame = 2
Query:  125 ENEKNGFINLVARYLSGESQHV*WSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVMEVRNGLTFLDLIVIHIENLNAKYGCNVPLLLM 460
            + + +GF  L  R+L  +   V W KIQ P ++ + PY+ +      P                      MGC GPKS++ VRN  TFLDL V  IE+LN  Y  +VPL+LM
Sbjct:   52 KKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLM 162          
BLAST of CN185793 vs. ExPASy Swiss-Prot
Match: UGPA_MOUSE (UTP--glucose-1-phosphate uridylyltransferase OS=Mus musculus GN=Ugp2 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.335e-11
Identity = 40/112 (35.71%), Postives = 55/112 (49.11%), Query Frame = 2
Query:  125 ENEKNGFINLVARYLSGESQHV*WSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVMEVRNGLTFLDLIVIHIENLNAKYGCNVPLLLM 460
            + + +GF  L  R+L  +   V W KIQ P ++ + PY+ +      P                      MGC GPKS++ VRN  TFLDL V  IE+LN  Y  +VPL+LM
Sbjct:   52 KKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLM 162          
BLAST of CN185793 vs. ExPASy Swiss-Prot
Match: UGPA_HUMAN (UTP--glucose-1-phosphate uridylyltransferase OS=Homo sapiens GN=UGP2 PE=1 SV=5)

HSP 1 Score: 67.0106 bits (162), Expect = 4.335e-11
Identity = 40/112 (35.71%), Postives = 55/112 (49.11%), Query Frame = 2
Query:  125 ENEKNGFINLVARYLSGESQHV*WSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVMEVRNGLTFLDLIVIHIENLNAKYGCNVPLLLM 460
            + + +GF  L  R+L  +   V W KIQ P ++ + PY+ +      P                      MGC GPKS++ VRN  TFLDL V  IE+LN  Y  +VPL+LM
Sbjct:   52 KKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLM 162          
BLAST of CN185793 vs. ExPASy Swiss-Prot
Match: UGPA_BOVIN (UTP--glucose-1-phosphate uridylyltransferase OS=Bos taurus GN=UGP2 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = 2
Query:  125 ENEKNGFINLVARYLSGESQHV*WSKIQTPTDEIVVPYDSLAP--VPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVMEVRNGLTFLDLIVIHIENLNAKYGCNVPLLLM 460
            + + +GF  L  R+L  +   V W KIQ P ++ + PY+ +    +P++ +                     MGC GPKS++ VRN  TFLDL V  IE+LN  Y  +VPL+LM
Sbjct:   52 KKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIKARGLPDNVSSVLNKLVVVKLNGGLGTS---MGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYDTDVPLVLM 162          
The following BLAST results are available for this feature:
BLAST of CN185793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UGPA2_DICDI8.734e-1235.54UTP--glucose-1-phosphate uridylyltransferase 2 OS=... [more]
UGPA_CRIGR3.319e-1135.71UTP--glucose-1-phosphate uridylyltransferase OS=Cr... [more]
UGPA_PIG4.335e-1135.71UTP--glucose-1-phosphate uridylyltransferase OS=Su... [more]
UGPA_MOUSE4.335e-1135.71UTP--glucose-1-phosphate uridylyltransferase OS=Mu... [more]
UGPA_HUMAN4.335e-1135.71UTP--glucose-1-phosphate uridylyltransferase OS=Ho... [more]
UGPA_BOVIN5.662e-1135.09UTP--glucose-1-phosphate uridylyltransferase OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185793 ID=CN185793; Name=CN185793; organism=Citrus sinensis; type=EST; length=461bp
GATGATAACGTCTGATTCTTCTAGATTCATCTTCCTCGTTTAGACCGAAT
CGATCACATGGCCACTGCACGCCGAGAAGCTCACTCAGCTCAGATCTGAC
GTTGCTGGCCTCAATCAAATCAATGAAAATGAGAAAAATGGATTCATCAA
CCTCGTTGCTCGCTATCTAAGCGGCGAATCGCAACACGTGTAATGGAGCA
AAATCCAAACGCCTACTGATGAAATCGTAGTTCCTTATGACAGCTTGGCA
CCAGTTCCTGAAGATCCAGCGGAAACCAAAAAGCTTTTGGATGATCTTGT
CGTGTTGAAGCTCAATGGAGGTTTGGGAACCACAATGGGCTGCACTGGTC
CCAAGTCTGTTATGGAAGTTCGTAACGGGTTGACATTTCTTGACCTCATC
GTCATCCATATTGAGAATCTCAATGCTAAATATGGATGTAATGTTCCCCT
GCTACTCATGA
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