CN185790

Overview
NameCN185790
Unique NameCN185790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185790_ssr100 microsatellite CN185790_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9776 contig Csv1_Contig9776:610..1311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.516e-18
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  382 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFP 684
            +++  A+ L LRPRQ+EVWFQNRRAR+KLKQTE++CE+LK+   +LT+EN RLH             P  ++  A++LTMCP CER+    +   +  P P
Sbjct:  165 QKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLH-REVEELRAMKVGPTTVN-SASSLTMCPRCERVTPAASPSRAVVPVP 263          

HSP 2 Score: 23.8682 bits (50), Expect = 1.516e-18
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = -3
Query:  665 KQHSTLNPKQKASLGK 712
            +Q+ TLNPKQK  L K
Sbjct:  156 RQNHTLNPKQKEVLAK 171          
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = -1
Query:  433 SKRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHMPAATLTMCPSC 687
            +++Q  A +L L  RQVEVWFQNRRARTKLKQTE DC+ L++ C+ L  +N RL              P+   +  AT  +CPSC
Sbjct:  142 AEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSSSPPV-SGLAVATPVVCPSC 225          
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  424 LNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHMPAAT--LTMCPSCERI 660
            L L  RQVEVWFQNRRAR+KLK TE++CE+LK+   +L ++NRRL             + L    P++T  LTMCP CER+
Sbjct:  103 LKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQ---------IEVEELRALKPSSTSALTMCPRCERV 174          
The following BLAST results are available for this feature:
BLAST of CN185790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ATB17_ARATH1.516e-1845.54Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
HOX26_ORYSJ1.871e-1345.88Putative homeobox-leucine zipper protein HOX26 OS=... [more]
ATHBX_ARATH1.584e-1249.38Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185790 ID=CN185790; Name=CN185790; organism=Citrus sinensis; type=EST; length=714bp
TTTTTTTTTTTTTTTTTAGTTAAAACTGCTTTCATAGATATAACTTGCTT
TTGTTTCACAATTTACAAACATATAAAAAAAAAGAAAAAAAGAAAAAAAG
ATGATGATGATTTTAAAAGGAGATTAATTAGCAATTAACATAAAACTATA
TATAATCTGGAGCATCTAGTAATATTTTCTACAGTTTAATTAATCACACT
AATATCTCTGATCACTACAAGCCCTGACCCAAAAAAAATAGCGGGGTTTG
TTGGAGTGTTCCATATAATTTTTATAATTTAATTTAATCTGATTTTCTTT
TCCTAATCCTATCTAACAACTCAATCAACAAGCTGCTGAAGGATTGGTGA
AGGGACTATAGCAGTGAGGCTTAGTACCCATGGGAAATGGGCCCTTCGAG
TTTCCATCGGCGATGCCGCCGCCGATCCGTTCACAAGAAGGGCACATCGT
CAGGGTAGCTGCCGGCATATGCATGTAAAGAGGCTGAGCTAGCTTCAGAG
CTTTGAGTTCTTGTAGCTCCTTGTGCAGCCTTCTGTTTTCATCAGTTAGG
GTTTCACAGCATTTCTTCAAGAATTCACAGTCCACTTCTGTTTGCTTAAG
CTTTGTCCTGGCTCTCCTATTCTGGAACCATACTTCAACTTGTCTTGGTC
GTAGGTTTAGTTGCCTTGCCCAAGCTTGCCTTTTGCTTAGGATTGAGAGT
GCTATGCTGTTTGA
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