DC900033

Overview
NameDC900033
Unique NameDC900033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.081e-52
Identity = 89/171 (52.05%), Postives = 130/171 (76.02%), Query Frame = 3
Query:   75 HLGRSGLRVSQLAYGAWVSFGNQLDVXEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPI 587
            +LG+SGLRVS L  G WV+FG Q+    A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+
Sbjct:   75 NLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPV 245          
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.081e-52
Identity = 89/171 (52.05%), Postives = 130/171 (76.02%), Query Frame = 3
Query:   75 HLGRSGLRVSQLAYGAWVSFGNQLDVXEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPI 587
            +LG+SGLRVS L  G WV+FG Q+    A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+
Sbjct:   93 NLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPV 263          
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.081e-52
Identity = 89/171 (52.05%), Postives = 130/171 (76.02%), Query Frame = 3
Query:   75 HLGRSGLRVSQLAYGAWVSFGNQLDVXEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPI 587
            +LG+SGLRVS L  G WV+FG Q+    A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+
Sbjct:   75 NLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPV 245          
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.330e-52
Identity = 91/171 (53.22%), Postives = 126/171 (73.68%), Query Frame = 3
Query:   75 HLGRSGLRVSQLAYGAWVSFGNQLDVXEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPI 587
            +LG+SGLRVS L  G WV+FG+Q+    A+ LL    +HGVN FD AEVYA G+AE  +G  ++  GW+RS  V++TKIFWGGQ   ++GLSRKHI+EG + SL RL ++YVD+++ +R D S+P+EE VRAM YVI++G A YWGTS WSA +I EA+ +A + +L+ P+
Sbjct:   82 NLGKSGLRVSCLGLGTWVTFGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEEIVRAMTYVINQGLALYWGTSRWSAAEIMEAYSMARQFNLIPPV 252          
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.551e-51
Identity = 89/171 (52.05%), Postives = 129/171 (75.44%), Query Frame = 3
Query:   75 HLGRSGLRVSQLAYGAWVSFGNQLDVXEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPI 587
            +LG+SGLRVS L  G WV+FG+Q+    A++L+    +HGVN FD AEVYA GRAE  +G+ +++  W+RS  VV+TKI+WGGQ   ++GLSRKHI+EG + SL+RL +DYVD+++ +R D ++P+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +L+ P+
Sbjct:   75 NLGKSGLRVSCLGLGTWVTFGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYWGGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIVRAMTFVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPV 245          
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.313e-50
Identity = 88/171 (51.46%), Postives = 124/171 (72.51%), Query Frame = 3
Query:   75 HLGRSGLRVSQLAYGAWVSFGNQLDVXEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPI 587
            +LG+SGLRVS L  G WV+FG+Q+    A+ +L    +HGVN FD AEVYA G+AE  +G  ++  GW+RS  V++TKIFWGGQ   ++GLSRKHI+EG + SL+RL + YVD+++ +R D + P+EE VRAM YVI++G A YWGTS W A +I EA+ +A + +L+ P+
Sbjct:   82 NLGKSGLRVSCLGLGTWVTFGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLRGSLERLQLGYVDIVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPV 252          
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: KCAB_SCHPO (Putative voltage-gated potassium channel subunit beta OS=Schizosaccharomyces pombe GN=SPCC965.06 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.229e-48
Identity = 94/173 (54.34%), Postives = 124/173 (71.68%), Query Frame = 3
Query:   78 LGRSGLRVSQLAYGAWVSFGNQ-LDVXEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGG--QGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPI 587
            LGRSGL+VS  + G W+++GN+  DV   K+ L+   D G+N FD AE+Y+NG +E +MG+AI+ELGW RS+ V++TK+F+G   + PN  GLSRKHI+EG  ASLKRL + YVDVI  HRPD S P+EE VRA   +I  G AFYWGTSEWSA +I  A  IA + +L+ P+
Sbjct:   18 LGRSGLKVSAFSLGGWLTYGNEGYDVEHTKNCLKQAWDLGINTFDTAEIYSNGNSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEWSAFEIEHAHHIATKYNLIAPV 190          
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: YAJO_ECOLI (Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 7.254e-25
Identity = 67/165 (40.61%), Postives = 100/165 (60.61%), Query Frame = 3
Query:   78 LGRSGLRVSQLAYGAWVSFGNQ--------LDVXEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEA 548
            LG++ LRVS+L  G  ++FG          L    ++ +++   + G+NFFD A  Y++G +EEI+G+A+R+   +R D+VV+TK+F    G   +GLSR  I+     SL+RL MDYVD++  HR D +TPIEET+ A+N V+  G A Y G S   A Q  +A
Sbjct:    6 LGKTDLRVSRLCLGC-MTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGSSEEIVGRALRDFA-RREDVVVATKVFHR-VGDLPEGLSRAQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMHASQFAQA 167          
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 57/158 (36.08%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   75 HLGRSGLRVSQLAYGAWVSFGNQLDVXEAKSLLQCCRDHGVNFFDNAEVYAN--GRAEEIMGQAIRE-LGWKRSDIVVSTKIFWG-GQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQ 536
            + G+SGLR+  L+ G W +FG+   +   +++L+   D G+  FD A  Y    G AEE  G+ +RE     R ++++STK  +    GP   G SRK+++     SLKR+ ++YVD+ Y HR D +TP+EET  A+ + +  G A Y G S +S ++
Sbjct:   17 YCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPER 174          
BLAST of DC900033 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 57/158 (36.08%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   75 HLGRSGLRVSQLAYGAWVSFGNQLDVXEAKSLLQCCRDHGVNFFDNAEVYAN--GRAEEIMGQAIRE-LGWKRSDIVVSTKIFWG-GQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQ 536
            + G+SGLR+  L+ G W +FG+   +   +++L+   D G+  FD A  Y    G AEE  G+ +RE     R ++++STK  +    GP   G SRK+++     SLKR+ ++YVD+ Y HR D +TP+EET  A+ + +  G A Y G S +S ++
Sbjct:   17 YCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPER 174          
The following BLAST results are available for this feature:
BLAST of DC900033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
KCAB1_MOUSE4.081e-5252.05Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN4.081e-5252.05Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN4.081e-5252.05Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB3_RAT5.330e-5253.22Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_XENLA1.551e-5152.05Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_HUMAN1.313e-5051.46Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB_SCHPO1.229e-4854.34Putative voltage-gated potassium channel subunit b... [more]
YAJO_ECOLI7.254e-2540.61Uncharacterized oxidoreductase yajO OS=Escherichia... [more]
YGHZ_ECOLI2.853e-2136.08Uncharacterized protein yghZ OS=Escherichia coli (... [more]
YGHZ_ECO572.853e-2136.08Uncharacterized protein yghZ OS=Escherichia coli O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900033 VSS Citrus sinensis cDNA clone VS27Q42 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900033 ID=DC900033; Name=DC900033; organism=Citrus sinensis; type=EST; length=587bp
GTACACTTCCCCAACAGGCCAAAAAAACAGACAACAAAAAGGTTAAAAAA
GGAAATTACAAAATGCAATACAAGCACCTGGGGAGATCGGGGCTGAGAGT
GAGCCAGCTCGCGTACGGAGCGTGGGTCAGCTTCGGGAACCAGCTGGACG
TGANNGAGGCGAAGTCGCTCTTGCAATGCTGCCGCGACCACGGCGTCAAC
TTCTTCGACAATGCCGAGGTCTACGCCAACGGCCGCGCGGAAGAGATCAT
GGGCCAGGCCATTCGCGAGCTCGGGTGGAAGCGATCCGACATCGTCGTTT
CCACCAAGATCTTTTGGGGCGGCCAGGGCCCCAACGATAAAGGCCTCTCC
AGAAAACACATTGTCGAGGGCACCAAAGCTTCCTTGAAACGCCTCGACAT
GGATTACGTCGACGTTATTTATTGTCACAGGCCGGACACGTCGACACCGA
TAGAGGAGACGGTGAGGGCGATGAATTATGTGATTGATAAGGGGTGGGCG
TTTTACTGGGGAACAAGTGAGTGGTCGGCGCAGCAGATCACCGAGGCTTG
GGGGATTGCTGAGCGCTTGGATTTGGTGGGCCCCATT
back to top