CN185787

Overview
NameCN185787
Unique NameCN185787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11459 contig Csv1_Contig11459:14..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 68/153 (44.44%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  289 TTKKNSNSIDVNKGYEESAAAGVAEYQILNRQA---SPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXX-----RAS------DEDEDGV-----NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            ++++NS+     +G + + A       + +  A   SP+S VS S  SG+  K ER+L                  RAS       +DEDG      ++RKKLRL+KEQ+ +LEE+FK+HSTLNPKQK ALA+QLNLR RQVEVWF NRRART
Sbjct:   65 SSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVS-SVMSGK--KSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRART 214          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 74/209 (35.41%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   88 MGFDDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPETATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGR-VVKRERDLXXXXXXXXXXXXXRAS-----DEDED--GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            MG +D    GL L LGFA                 NH  LQL       P  +L    +++P   T  +  +       +  + ++     + +     +SP+S +S++ S  R   +RE                R+S     DE+ED  G   RKKLRL+K+QSA+LE++FK+H+TLNPKQK ALA++L L  RQVEVWF NRRART
Sbjct:    3 MGKED---LGLSLSLGFAQ----------------NHP-LQLNLKPTSSPMSNL----QMFPWNQTLVSSSDQQKQQFLRKIDVNSLPTTVDLEEETGVSSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLDRSSSRGTSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRART 187          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 1
Query:  499 SDEDEDGVN---ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            SDE++ G     +RKKLRL+K+QSA+LE+SF++H TLNP+QK  LA+QL LRPRQVEVWF NRRART
Sbjct:   68 SDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRART 134          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 1
Query:  499 SDEDEDGVN---ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            SDE++ G     +RKKLRL+K+QSA+LE+SF++H TLNP+QK  LA+QL LRPRQVEVWF NRRART
Sbjct:   68 SDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRART 134          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  508 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            D  G  ARKKLRL+K+Q+A+LEE FK H TL PKQK ALA+ LNLRPRQVEVWF NRRART
Sbjct:   86 DVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRART 146          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  508 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            D  G  ARKKLRL+K+Q+A+LEE FK H TL PKQK ALA+ LNLRPRQVEVWF NRRART
Sbjct:   86 DVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRART 146          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  508 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            D+     RKKLRLT+EQS LLE+SF+Q+ TLNPKQK+ LA+ L LRPRQ+EVWF NRRAR+
Sbjct:  131 DDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARS 191          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  502 DEDEDGVNAR---KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            DE+E GV      KKLRL+KEQS LLEESF+ + TL PKQK+ALA +L LRPRQVEVWF NRRART
Sbjct:   65 DEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRART 130          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  502 DEDEDGVNAR---KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            DE+E GV      KKLRL+KEQS LLEESF+ + TL PKQK+ALA +L LRPRQVEVWF NRRART
Sbjct:   65 DEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRART 130          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  517 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            G   RKKL+LTKEQS LLE+SF+ H+ L+  QK  LARQL L+PRQVEVWF NRRART
Sbjct:  110 GGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRART 167          
The following BLAST results are available for this feature:
BLAST of CN185787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HAT3_ARATH7.431e-2044.44Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HAT1_ARATH1.073e-1835.41Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
HOX17_ORYSJ2.391e-1867.16Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI2.391e-1867.16Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX28_ORYSJ5.326e-1873.77Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI5.326e-1873.77Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
ATB17_ARATH7.690e-1767.21Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
HOX3_ORYSJ1.713e-1669.70Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI1.713e-1669.70Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX18_ORYSJ5.511e-1568.97Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185787 ID=CN185787; Name=CN185787; organism=Citrus sinensis; type=EST; length=692bp
ATGCCTCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCTTCAGAAGTCC
CGAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATG
ATGGGTGTAACACAGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATA
GAAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCACCA
GCAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGG
GCCTTCCTGGTGAGATTTACCCTGAGACTGCTACTGCTACTACCAAAAAG
AATAGTAATAGTATTGATGTGAACAAAGGTTACGAGGAATCCGCAGCAGC
AGGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTG
CTGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGAC
CTTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCATCAAGAGCCAG
TGATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGACTCACCA
AAGAACAGTCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCTC
AATCCTAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGACCAAG
ACAAGTTGAAGTATGGTTCCCGAATAGGAGAGCCAGGACAAA
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