CN185787

Overview
NameCN185787
Unique NameCN185787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  517 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            G   RKKL+LTKEQS LLE+SF+ H+ L+  QK  LARQL L+PRQVEVWF NRRART
Sbjct:  110 GGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRART 167
[Close]
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  502 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            D+   G   RKKLRLTKEQS LLEESF Q+ TL PKQK+ LA  L L  RQVEVWF NRRAR+
Sbjct:   59 DDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARS 121
[Close]
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:  508 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            DE+G + RKKLRLT EQ+ LLE+SF+ H+ L+  +KQ LA +L L  RQVEVWF NRRART
Sbjct:  110 DEEGAS-RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRART 169
The following BLAST results are available for this feature:
BLAST of CN185787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HOX18_ORYSI5.511e-1568.97Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
ATHBX_ARATH1.603e-1466.67Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
HOX26_ORYSJ1.149e-1262.30Putative homeobox-leucine zipper protein HOX26 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185787 ID=CN185787; Name=CN185787; organism=Citrus sinensis; type=EST; length=692bp
ATGCCTCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCTTCAGAAGTCC
CGAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATG
ATGGGTGTAACACAGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATA
GAAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCACCA
GCAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGG
GCCTTCCTGGTGAGATTTACCCTGAGACTGCTACTGCTACTACCAAAAAG
AATAGTAATAGTATTGATGTGAACAAAGGTTACGAGGAATCCGCAGCAGC
AGGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTG
CTGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGAC
CTTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCATCAAGAGCCAG
TGATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGACTCACCA
AAGAACAGTCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCTC
AATCCTAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGACCAAG
ACAAGTTGAAGTATGGTTCCCGAATAGGAGAGCCAGGACAAA
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