CN185784

Overview
NameCN185784
Unique NameCN185784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185784 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = -3
Query:  295 LDSEEAYPSPG--KEGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGV----------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 702
            L SE+ YP  G  K   C  + +   V  +    +    E  + H + +  P++V   +    + Y+ GV  +T     P  V+H+V+ VG+G + +G+                PYW++KNSWG +WG+ GYF++  G N CG+     YP  A
Sbjct:  207 LASEKDYPFQGDRKPHRC-LAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTINM-KLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGV---TKYPFTA 356          
BLAST of CN185784 vs. ExPASy Swiss-Prot
Match: CATL2_PARTE (Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT00022898001 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 47/129 (36.43%), Postives = 70/129 (54.26%), Query Frame = -3
Query:  298 YPSPGKEGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 684
            YP   K+G CK S +     V    +I   + DEL  A+   R VSVA +  + ++FY+SGV S  KC     ++NH VV VG   +     W I+NSWG +WG+ G+ ++  G + CGI    S+P++
Sbjct:  198 YPYTAKDGTCKTSVKRPYTHVQGFTDID--SCDELAQAIQ-ERTVSVAVDA-NPWQFYRSGVLS--KCTK---NLNHGVVLVGVQADGA---WKIRNSWGSSWGEAGHIRL-AGGDTCGICAAPSFPIL 313          
BLAST of CN185784 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 47/136 (34.56%), Postives = 68/136 (50.00%), Query Frame = -3
Query:  301 YPSPGKEGVCKFSSENVG---VQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 684
            YP   K+  C+  +  VG   V+      +    E  L +A+   +PVSV  E     F+ YK G++  + CG     V+HAV AVGYG   G  Y LIKNSWG  WG++GY ++         +CG+   + YP+
Sbjct:  218 YPYIAKQQTCR--ANQVGGPKVKTNGVGRVQSNNEGSLLNAIAH-QPVSVVVESAGRDFQNYKGGIFEGS-CGTK---VDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 346          
BLAST of CN185784 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = -3
Query:  430 LDSEEAYPSPGKEGV-CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYG 702
            +D+E +YP   ++G  CKF + N+G Q++   N+T G+E  LQ A     PVSVA +   + F+ Y+SG+Y    C  T +D  H V+ VGYG
Sbjct:  196 IDTESSYPYTAEDGKECKFKTSNIGAQIVSYQNVTSGSEASLQSASNNA-PVSVAIDASNESFQLYESGIYYEPACSPTQLD--HGVLVVGYG 285          
BLAST of CN185784 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = -3
Query:  325 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 555
            P+     V     +Y+SGVY  T  G   +   HA+  VGYG  +DG  YW+IKNSWG +WG++GYF++  G N C I
Sbjct:  218 PLQTMIVVYADLSYYESGVYKHTY-GTINLGF-HALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRI 293          
BLAST of CN185784 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 44/157 (28.03%), Postives = 70/157 (44.59%), Query Frame = -3
Query:  295 LDSEEAYPSPGKEGVCKFSSENVG-VQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV---EDGV-----------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 702
            L SE+ YP  GK    +   +    V  +    +    E  +   +    P++V   +    + Y+ GV  +T     P  V+H+V+ VG+G    E+G+                 PYW++KNSWG  WG+ GYF++  G N CGI     +P+ A
Sbjct:  209 LASEKDYPFQGKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTINMKP-LQLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGSNTCGI---TKFPLTA 361          
BLAST of CN185784 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 45/156 (28.85%), Postives = 68/156 (43.59%), Query Frame = -3
Query:  295 LDSEEAYPSPG--KEGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV------------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 702
            L SE+ YP  G  K   C          + D + +    E ++   +    P++V   +    + YK GV  +T     P  V+H+V+ VG+G  + V                  P+W++KNSWG  WG  GYF++  G N CGI     YP+ A
Sbjct:  209 LASEKDYPFQGQVKPHRCLAKKRTKVAWIQDFIMLP-DNEQKIAWYLATQGPITVTINM-KLLKLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI---TKYPLTA 359          
The following BLAST results are available for this feature:
BLAST of CN185784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
CATW_MOUSE1.314e-1129.03Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATL2_PARTE1.716e-1136.43Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT0... [more]
PAPA4_CARPA2.241e-1134.56Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CYSP4_DICDI4.993e-1139.78Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]
CATB1_GIALA4.993e-1143.59Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
CATW_HUMAN6.521e-1128.03Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATW_FELCA6.521e-1128.85Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185784 ID=CN185784; Name=CN185784; organism=Citrus sinensis; type=EST; length=704bp
TTTTTTTTTTTTTTTTAAGCTTCCATATAACAACTACCTTGCATTGCCAT
TTATATATAACATCGGTGGTGTCCTAGTCACAATGACTGTTTACATGGAC
ATAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTG
TAGATTATATGGACATTAATCTCCGAATTTATTTTGTACATAAAGCCAAG
CATTCTGCTATCATGCTTGAGTGAAATAATATAAGTTTTATGAGCAAATG
ACTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCAC
AACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCT
CCATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTA
ATCAGCCAATATGGAACGCCGTCTTCAACTCCGTACCCAACAGCAACGAC
AGCATGGTTCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAA
CTCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTC
ACAGGTCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAA
GGTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGA
ATTTGCAGACACCCTCTTTTCCGGGGGAGGGATATGCTTCCTCAGAATCA
AGGC
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