CN185770

Overview
NameCN185770
Unique NameCN185770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_YERPB (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 56/154 (36.36%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_YERPA (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 56/154 (36.36%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_YERP3 (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 56/154 (36.36%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_YERE8 (L-threonine 3-dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 56/154 (36.36%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_ANADF (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P +G +DV +R++   ICG+DVH       +   +  PM++GHE  GV++ VG EV+   PGDRV+ E  ++C  C +C+ GR +LC   +      P  GS A  VV PAD  +++PD++  E  A+ +P     H      +  E +VL+ GA
Sbjct:   21 VPEVGVHDVRIRVRKSAICGTDVHIYNWDEWSQRTIPVPMIVGHEYVGVVDAVGGEVEAFHPGDRVSGEGHVTCGFCRNCRAGRRHLCRHTIGVGVNRP--GSFAEYVVIPADNVYRIPDDIPDEVAAIFDPYGNATHTALSFELVGE-DVLVTGA 173          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_ANAD2 (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 55/155 (35.48%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P +G +DV++R+    ICG+DVH       +   V  PMV+GHE  G +EKVG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GA
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGA 173          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_ANASK (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain K) GN=tdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 54/155 (34.84%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P +G +DV++++    ICG+DVH       +   V  PMV+GHE  G +EKVG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GA
Sbjct:   21 VPEVGVHDVMIKVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGA 173          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_ANADE (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 54/155 (34.84%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P +G +DV++R+    ICG+DVH       +   V  PMV+GHE  G +E+VG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GA
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVERVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGA 173          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_PSEHT (L-threonine 3-dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L++++   ICG+DVH  K    A   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+PDN+S E  ++ +P    +H     ++  E +VLI GA
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYKWDEWAQKTIPTPMVVGHEYVGEVVDMGQEVRGFKVGDRVSGEGHITCGHCRNCRAGRVHLCRNTTGVGVNR-EGAFAEYLVIPAFNAFKIPDNISDELASIFDPFGNAVHTALSFDLVGE-DVLITGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_PROMH (L-threonine 3-dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 61/175 (34.86%), Postives = 91/175 (52.00%), Query Frame = 3
Query:  237 LMGVNTLKIQP------FELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +  ++ LK QP        +P LG  DV+++++   ICG+DVH       +   +  PMV+GHE  G I  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+  E  A+ +P    +H     ++  E +VL+ GA
Sbjct:    1 MKALSKLKAQPGIWMTDVPVPELGHNDVMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYIGEIVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNIPDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
The following BLAST results are available for this feature:
BLAST of CN185770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
TDH_YERPB2.197e-2036.36L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPA2.197e-2036.36L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERP32.197e-2036.36L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERE82.197e-2036.36L-threonine 3-dehydrogenase OS=Yersinia enterocoli... [more]
TDH_ANADF2.197e-2035.26L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_ANAD22.197e-2035.48L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_ANASK4.895e-2034.84L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_ANADE4.895e-2034.84L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_PSEHT6.392e-2035.71L-threonine 3-dehydrogenase OS=Pseudoalteromonas h... [more]
TDH_PROMH8.349e-2034.86L-threonine 3-dehydrogenase OS=Proteus mirabilis (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185770 ID=CN185770; Name=CN185770; organism=Citrus sinensis; type=EST; length=740bp
CAGAAATCAACCATCTACGCGGATAAATACAAAGAACACTTGATGTTATT
CCTGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGGT
AGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTT
TTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAA
AAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAA
CACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATG
TTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTAT
CTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGAT
TGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGA
CTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGG
CGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAA
ATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGC
ATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAA
GGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGC
CAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCA
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