CN185770

Overview
NameCN185770
Unique NameCN185770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_PHOLL (L-threonine 3-dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 56/154 (36.36%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P LG  DV+++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GA
Sbjct:   21 PELGHNDVMIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFKIGDRVSGEGHITCGYCRNCRGGRTHLCRNTIGVGVNRA-GCFAQYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_AERS4 (L-threonine 3-dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P LG  D+L++++   ICG+D+H       A   +  PMV+GHE  G +  VG EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  GS A  +V PA   FKLPDN+  E  A+ +P    +H     ++  E +VLI GA
Sbjct:   21 PELGHNDLLIKIRKTAICGTDMHIYNWDEWAQKTIPVPMVVGHEYVGEVVAVGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GSFAEYLVIPAFNAFKLPDNIPDELAAIFDPFGNAVHTALSFDLVGE-DVLITGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_PSEA6 (L-threonine 3-dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 52/156 (33.33%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  273 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            E+P++G  D+L++++   ICG+D+H       +   +  PMV+GHE  G + ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+PDN+S +  A+ +P    +H     ++  E +VLI GA
Sbjct:   19 EMPTVGHNDILIKIRKTAICGTDMHIYNWDEWSQNTIPVPMVVGHEYVGEVVEIGEEVRGFAIGDRVSGEGHITCGHCRNCRAGRRHLCRNTSGVGVNRA-GAFAEYLSIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_ECOLI (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12) GN=tdh PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  A+ +P    +H     ++  E +VL+ GA
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_ECODH (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  A+ +P    +H     ++  E +VL+ GA
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_ECOBW (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  A+ +P    +H     ++  E +VL+ GA
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_ECO24 (L-threonine 3-dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK  + GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GA
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFMIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: YJMD_BACSU (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjmD OS=Bacillus subtilis GN=yjmD PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.860e-19
Identity = 59/151 (39.07%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  297 DVLVRMKAVGICGSDVH-YLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVH--GSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +VLV++K VGICGSD+H Y  T   A      P VIGHE  G +E VG+ V++L PGD V +EP   C  C  C+ GR N+C ++  F    VH  G +   +V P      +  ++  EE  M EP ++G  A  R  +     VLI GA
Sbjct:   27 EVLVKVKRVGICGSDMHIYHGTNPLATL----PRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGRPNVCAKLSVFG---VHEDGGMREYIVLPERQLHAVSKDLPWEEAVMAEPYTIGAQAVWRGQVEKGDTVLIQGA 170          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: Y053_HAEIN (Uncharacterized zinc-type alcohol dehydrogenase-like protein HI0053 OS=Haemophilus influenzae GN=HI0053 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.860e-19
Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  249 NTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVP-GDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            N + ++    P     DVL++++++GICGSD+      R  + +V  P ++GHE  G + + G  +   V  GDRV ++P + C +C  C  GR N C  +K      + G +   + HPA L  K+PDN+ + +  + EPL++ LHA  R  +    +++I+GA
Sbjct:   14 NNVVVKEVPYPEKSDNDVLIQVESMGICGSDIG---AYRGTNPLVTYPRILGHEIVGRVIESGIGMSDGVRVGDRVIVDPYVCCGQCYPCSIGRTNCCESLKVIGVH-IDGGMQEVIRHPAHLLTKVPDNLPIHQLPLAEPLTIALHALHRTTLKSGEHIVIIGA 174          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_THET2 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 55/155 (35.48%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P  GP ++LVR++A  ICG+D+H  K    A   ++ P+V GHE +GV+E VG  VK    GD V+LE  + C  C  C+ G Y++C   K        G  A  VV PA+  +  P ++  E  A+ EP    +H     +     +VLI GA
Sbjct:   20 VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVKRPQVGDHVSLESHVVCHACPACRTGNYHVCLNTKILGVDR-DGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGA 173          
The following BLAST results are available for this feature:
BLAST of CN185770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
TDH_PHOLL1.090e-1936.36L-threonine 3-dehydrogenase OS=Photorhabdus lumine... [more]
TDH_AERS41.090e-1937.42L-threonine 3-dehydrogenase OS=Aeromonas salmonici... [more]
TDH_PSEA61.424e-1933.33L-threonine 3-dehydrogenase OS=Pseudoalteromonas a... [more]
TDH_ECOLI1.424e-1935.90L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECODH1.424e-1935.90L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOBW1.424e-1935.90L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECO241.424e-1935.26L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
YJMD_BACSU1.860e-1939.07Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
Y053_HAEIN1.860e-1931.52Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_THET23.173e-1935.48L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185770 ID=CN185770; Name=CN185770; organism=Citrus sinensis; type=EST; length=740bp
CAGAAATCAACCATCTACGCGGATAAATACAAAGAACACTTGATGTTATT
CCTGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGGT
AGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTT
TTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAA
AAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAA
CACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATG
TTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTAT
CTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGAT
TGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGA
CTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGG
CGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAA
ATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGC
ATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAA
GGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGC
CAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCA
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