CN185770

Overview
NameCN185770
Unique NameCN185770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_SALPB (L-threonine 3-dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GA
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_SALPA (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A GN=tdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GA
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_SALNS (L-threonine 3-dehydrogenase OS=Salmonella newport (strain SL254) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GA
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_SALHS (L-threonine 3-dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GA
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_SALEP (L-threonine 3-dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GA
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_SALDC (L-threonine 3-dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GA
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_SALCH (L-threonine 3-dehydrogenase OS=Salmonella choleraesuis GN=tdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GA
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_SALA4 (L-threonine 3-dehydrogenase OS=Salmonella agona (strain SL483) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GA
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGA 172          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_THET8 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tdh PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  276 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            +P  GP ++LVR++A  ICG+D+H  K    A   ++ P+V GHE +GV+E VG  V+    GD V+LE  I C  C  C+ G Y++C   +        G  A  VV PA+  +  P ++  E  A+ EP    +H     +     +VLI GA
Sbjct:   20 VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDR-DGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGA 173          
BLAST of CN185770 vs. ExPASy Swiss-Prot
Match: TDH_SHESR (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-7) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 52/154 (33.77%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  279 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGA 740
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GA
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGA 172          
The following BLAST results are available for this feature:
BLAST of CN185770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
TDH_SALPB1.206e-1834.42L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPA1.206e-1834.42L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALNS1.206e-1834.42L-threonine 3-dehydrogenase OS=Salmonella newport ... [more]
TDH_SALHS1.206e-1834.42L-threonine 3-dehydrogenase OS=Salmonella heidelbe... [more]
TDH_SALEP1.206e-1834.42L-threonine 3-dehydrogenase OS=Salmonella enteriti... [more]
TDH_SALDC1.206e-1834.42L-threonine 3-dehydrogenase OS=Salmonella dublin (... [more]
TDH_SALCH1.206e-1834.42L-threonine 3-dehydrogenase OS=Salmonella cholerae... [more]
TDH_SALA41.206e-1834.42L-threonine 3-dehydrogenase OS=Salmonella agona (s... [more]
TDH_THET81.575e-1834.84L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
TDH_SHESR1.575e-1833.77L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185770 ID=CN185770; Name=CN185770; organism=Citrus sinensis; type=EST; length=740bp
CAGAAATCAACCATCTACGCGGATAAATACAAAGAACACTTGATGTTATT
CCTGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGGT
AGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTT
TTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAA
AAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAA
CACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATG
TTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTAT
CTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGAT
TGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGA
CTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGG
CGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAA
ATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGC
ATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAA
GGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGC
CAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCA
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