DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.081e-17
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH   G+LSMAN+GP TNG Q F+ T  T +L+GKH VFGQVV+GMD+V+ IE   +   + ++ V+I  CG++
Sbjct:  103 ENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQCGEM 181          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.081e-17
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 270
            EN   KH  P +LSMANAGP TNGSQ F+ T  T  LDGKH VFG+V++G  VV+A+E + + S R  +  VIA CG+L+
Sbjct:   93 ENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 9.081e-17
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH   G+LSMANAGP TNGSQ F+ T  T  LDGKH VFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:  106 ENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.081e-17
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQL 267
            EN   KH GPG+LSMANAG  TNG Q F+  AKT +LD KH VFG+V++GM  V+ IE V + +    K P+V+  CGQL
Sbjct:  104 ENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.186e-16
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIE--KVG-SSSGRTNKPVVIADCGQL 267
            EN   KH  PG+LSMANAGP TNGSQ F+ T  T +LD KH VFG+V EGMDVVK +E  K G       N  VVI+ CG++
Sbjct:  101 ENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.186e-16
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH   G+LSMANAGP TNGSQ F+ T  T  LDGKH VFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:  106 ENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.186e-16
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 267
            EN   +HT  G+LSMANAG  TNGSQ F+ TA T WLDGKH VFG+V+EG D+V  I+ V      R  K V I  CG+L
Sbjct:  117 ENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGEL 196          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPG+LSMAN G  TN SQ F+   K   LD KH VFG V +GMD V+ IE  GS  G  ++ + I +CGQL
Sbjct: 2975 ENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.023e-16
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQL 267
            P EN   KHT P  LSMANAG  TNGSQ F+ T  T WLDGKH VFG+V+EG D+V AIE   + +    K  + IAD G++
Sbjct:  112 PDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGEI 193          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 84.7297 bits (208), Expect = 2.642e-16
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH   G+LSMANAG  TNGSQ F+ T  T  LDGKH VFGQV++GM V K +E V     +  K  VIA+CG+L
Sbjct:  106 ENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPIH_ASPFU9.081e-1749.37Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPID_RHIOR9.081e-1753.75Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPID_MOUSE9.081e-1753.1640 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
CYP11_CAEEL9.081e-1753.75Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPIH_GIBZE1.186e-1656.10Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPID_RAT1.186e-1653.1640 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPIB_ARTBE1.186e-1655.00Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
RBP2_MOUSE1.549e-1653.16E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPIB_YARLI2.023e-1653.66Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPID_BOVIN2.642e-1654.4340 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
back to top