DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.451e-16
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQLS 270
            P EN    H  PG+LSMANAGP +NGSQ F+ T KT WLDG H VFG+V+ G D+VK I K  + +   +KP   V I   GQLS
Sbjct:  107 PDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISK--AETDNRDKPLEDVKIIKSGQLS 189          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.507e-16
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 261
            EN   KHT P +LSMANAGP TNGSQ F+      WLDGKH VFG+VV+G D ++  +K  S  G+    + I D G
Sbjct:   84 ENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGKPKTTIKIVDSG 160          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.688e-16
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEK--VGSSSGRTNKPVVIADCGQL 267
            P EN   KH  PG+LSMANAG  +NG Q F+ T    +LDGKH VFG+V+EG D+VK IE   VG++S R    V I +CG++
Sbjct:   92 PDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANS-RPKSNVAIVECGEM 173          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.688e-16
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQLS 270
            KH  P +LSMANAGP TNGSQ F+ T  T  LDGKH VFG+V+ G  VV+ IE + + SG R  K  +I DCG+L+
Sbjct:  105 KHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELT 180          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.004e-15
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIE--KVGSSSGRTNKPVVIADCGQL 267
            P EN   KH+  G+LSMANAG  TNGSQ F+ T  T WLDGKH VFG+V+EG DVV+ IE  K G       +P+ IA  G+L
Sbjct:  115 PDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPA-EPIKIAKSGEL 196          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.004e-15
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            EN   +HT  G+LSMANAG  TNGSQ F+ TA T WLDGKH VFG+V+EG D+V  I+ V    GR ++P   V I   G+L
Sbjct:  116 ENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNV--PKGRNDRPLKDVKIVKSGEL 195          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.004e-15
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 267
            EN   KH   G+LSMAN+GP TNGSQ F+ T +T  LDGKH VFG+V +GM VV++IE V        ++ VVI DCG++
Sbjct:   94 ENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEI 173          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 41/79 (51.90%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPG+LSMAN G  TN SQ  +   K   LD KH VFG V +GMD VK IE  GS  G   + + I +CGQ+
Sbjct: 3146 ENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPV---VIADCGQL 267
            EN    H  P +LSMAN+GP TNGSQ F+ T  T  LDGKH VFG+V+EG  +V+ +E+  S  G  ++PV    IADCG+L
Sbjct:   97 ENFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHVVFGEVIEGKSIVRQLER--SEKGANDRPVEDWKIADCGEL 176          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.713e-15
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 261
            EN   KH  P +LSMANAGP TNGSQ F+ T  T  LDGKH VFG+V++G   V+ IE + + +     PVVI +CG
Sbjct:   89 ENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPIB_SCHPO3.451e-1652.94Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIA_PARPR4.507e-1650.65Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
PPIH_SCHPO7.688e-1651.81Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
PPID_GIBZE7.688e-1655.26Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPIB_NEUCR1.004e-1554.22Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_EMENI1.004e-1553.66Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
CYP40_ARATH1.004e-1552.50Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
RBP2_HUMAN1.311e-1551.90E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
PPID_CANAL1.311e-1551.22Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]
PPID_SCHPO1.713e-1551.9540 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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